miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 5' -62.6 NC_006151.1 + 78704 0.66 0.628234
Target:  5'- gGGCcucgucgCCGCGAcgGCGCCcgugGGGCGCgCGc -3'
miRNA:   3'- gCCGa------GGCGCU--CGUGGa---CCUGCG-GCa -5'
29376 5' -62.6 NC_006151.1 + 76174 0.66 0.628234
Target:  5'- -uGCg-CGCGAGCugCUGGAUGgCGc -3'
miRNA:   3'- gcCGagGCGCUCGugGACCUGCgGCa -5'
29376 5' -62.6 NC_006151.1 + 59653 0.66 0.628234
Target:  5'- aCGcGCUCgcUGCGcAGCGCCUcggGGACGCgCGc -3'
miRNA:   3'- -GC-CGAG--GCGC-UCGUGGA---CCUGCG-GCa -5'
29376 5' -62.6 NC_006151.1 + 37954 0.66 0.628234
Target:  5'- gCGuGCcCCGCGAGCuggcGGACGCCu- -3'
miRNA:   3'- -GC-CGaGGCGCUCGuggaCCUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 13688 0.66 0.628234
Target:  5'- cCGGCcaaUGCGGGCuCCcgGGACGCgGg -3'
miRNA:   3'- -GCCGag-GCGCUCGuGGa-CCUGCGgCa -5'
29376 5' -62.6 NC_006151.1 + 138251 0.66 0.628234
Target:  5'- gGGCgcgaCCGCGcAGCGggUGGugGCCa- -3'
miRNA:   3'- gCCGa---GGCGC-UCGUggACCugCGGca -5'
29376 5' -62.6 NC_006151.1 + 118099 0.66 0.628234
Target:  5'- aGGCgcugcgCCGCGAcCugCUGG-CGCUGc -3'
miRNA:   3'- gCCGa-----GGCGCUcGugGACCuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 94053 0.66 0.618426
Target:  5'- gCGGCgucgCCGCGgaacAGCAUcagCUGGaugGCGCUGUa -3'
miRNA:   3'- -GCCGa---GGCGC----UCGUG---GACC---UGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 99488 0.66 0.618426
Target:  5'- gGGCUCCccgagaaggGCgugGAGCACgUGGuGCGCCa- -3'
miRNA:   3'- gCCGAGG---------CG---CUCGUGgACC-UGCGGca -5'
29376 5' -62.6 NC_006151.1 + 73591 0.66 0.618426
Target:  5'- gGGCgaagCCGgGGuGCAgCUGG-CGCCGc -3'
miRNA:   3'- gCCGa---GGCgCU-CGUgGACCuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 25092 0.66 0.617446
Target:  5'- cCGGCgucggCCauuguugcugcguGCGAGCGCUgggcgUGGACGCgCGa -3'
miRNA:   3'- -GCCGa----GG-------------CGCUCGUGG-----ACCUGCG-GCa -5'
29376 5' -62.6 NC_006151.1 + 102006 0.66 0.608629
Target:  5'- cCGcGCacCCGCGAGC-CCaUGGGCuucGCCGUc -3'
miRNA:   3'- -GC-CGa-GGCGCUCGuGG-ACCUG---CGGCA- -5'
29376 5' -62.6 NC_006151.1 + 85762 0.66 0.608629
Target:  5'- gGGCUggCCGCGcuGGCG-CUGGACGCg-- -3'
miRNA:   3'- gCCGA--GGCGC--UCGUgGACCUGCGgca -5'
29376 5' -62.6 NC_006151.1 + 55077 0.66 0.608629
Target:  5'- gGGCUcggCCGCGGcGCGCCUcGuGCGCCu- -3'
miRNA:   3'- gCCGA---GGCGCU-CGUGGA-CcUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 39966 0.66 0.608629
Target:  5'- gGGCgccgucgccgCCGCGGGCGCCc---CGCCGg -3'
miRNA:   3'- gCCGa---------GGCGCUCGUGGaccuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 129058 0.66 0.608629
Target:  5'- gCGGCUCCGcCGAGC------ACGCCGUg -3'
miRNA:   3'- -GCCGAGGC-GCUCGuggaccUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 28825 0.66 0.608629
Target:  5'- cCGGCcaaUGCGGGCcCCggGGACGCgGg -3'
miRNA:   3'- -GCCGag-GCGCUCGuGGa-CCUGCGgCa -5'
29376 5' -62.6 NC_006151.1 + 136433 0.66 0.60765
Target:  5'- gCGGCgcacgCCGCgcgcuacgucgacGAGCGCgUGcGCGCCGa -3'
miRNA:   3'- -GCCGa----GGCG-------------CUCGUGgACcUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 69635 0.66 0.598847
Target:  5'- uCGGCgucCCGCGcgugcGGCGCCgccgGGuCGUCGa -3'
miRNA:   3'- -GCCGa--GGCGC-----UCGUGGa---CCuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 82008 0.66 0.598847
Target:  5'- gGGCggCCGCGuGCGCCgccGACaGCUGg -3'
miRNA:   3'- gCCGa-GGCGCuCGUGGac-CUG-CGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.