miRNA display CGI


Results 1 - 20 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29377 3' -62.8 NC_006151.1 + 131803 0.66 0.63153
Target:  5'- aGCGCGCCauccuccucggccucGGCUaGCGUCaccguggugauGAGcgGGGCg -3'
miRNA:   3'- aCGCGCGG---------------CUGG-CGCGG-----------CUCuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 27186 0.66 0.62762
Target:  5'- gGgGCGCCagggGGCCGCGCagaAGGcgccgGGGCc -3'
miRNA:   3'- aCgCGCGG----CUGGCGCGgc-UCUa----CCCG- -5'
29377 3' -62.8 NC_006151.1 + 42847 0.66 0.62762
Target:  5'- aGC-CGCCGucGCCGCugcacgacgaugGUCGAGG-GGGCc -3'
miRNA:   3'- aCGcGCGGC--UGGCG------------CGGCUCUaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 82992 0.66 0.62762
Target:  5'- cUGCGcCGCCacGGCCGCGgCGcAGAcgcGcGGCg -3'
miRNA:   3'- -ACGC-GCGG--CUGGCGCgGC-UCUa--C-CCG- -5'
29377 3' -62.8 NC_006151.1 + 134312 0.66 0.62762
Target:  5'- uUGCaCGCCG-CUGCGCCucgcGccGGGCa -3'
miRNA:   3'- -ACGcGCGGCuGGCGCGGcu--CuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 48892 0.66 0.62762
Target:  5'- cGCGCGCCugcGCUG-GCCGAGuaccGcGGCc -3'
miRNA:   3'- aCGCGCGGc--UGGCgCGGCUCua--C-CCG- -5'
29377 3' -62.8 NC_006151.1 + 49254 0.66 0.62762
Target:  5'- gGCGCgGCuCGugCGCGCCGucGUccaGcGGCu -3'
miRNA:   3'- aCGCG-CG-GCugGCGCGGCucUA---C-CCG- -5'
29377 3' -62.8 NC_006151.1 + 128987 0.66 0.62762
Target:  5'- cGCGCGCCaGGCCacgucCGCCGuGAUGc-- -3'
miRNA:   3'- aCGCGCGG-CUGGc----GCGGCuCUACccg -5'
29377 3' -62.8 NC_006151.1 + 134249 0.66 0.62762
Target:  5'- cGCGgGCUu-UCGCGgCGAGGUGcaGGCg -3'
miRNA:   3'- aCGCgCGGcuGGCGCgGCUCUAC--CCG- -5'
29377 3' -62.8 NC_006151.1 + 31557 0.66 0.617846
Target:  5'- gGCGcCGCgGugCGCGaacgugaucaCGGGG-GGGCg -3'
miRNA:   3'- aCGC-GCGgCugGCGCg---------GCUCUaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 8249 0.66 0.617846
Target:  5'- gGcCGgGCCGG-CGCGCCGGGAcgccccuccgGGGg -3'
miRNA:   3'- aC-GCgCGGCUgGCGCGGCUCUa---------CCCg -5'
29377 3' -62.8 NC_006151.1 + 96863 0.66 0.617846
Target:  5'- cGCGCccGCCGGgCGCGgCGcgcgcggGGGCa -3'
miRNA:   3'- aCGCG--CGGCUgGCGCgGCucua---CCCG- -5'
29377 3' -62.8 NC_006151.1 + 97650 0.66 0.617846
Target:  5'- gUGCGCGCCGccuCCugguCGCCGc---GGGCc -3'
miRNA:   3'- -ACGCGCGGCu--GGc---GCGGCucuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 97926 0.66 0.617846
Target:  5'- cGC-CGCCGagGCCGCGCCcgcccucgucGA-GGGCg -3'
miRNA:   3'- aCGcGCGGC--UGGCGCGGcu--------CUaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 129691 0.66 0.617846
Target:  5'- gGC-CGCCGuggaccGCgGCGCCGAGca-GGCa -3'
miRNA:   3'- aCGcGCGGC------UGgCGCGGCUCuacCCG- -5'
29377 3' -62.8 NC_006151.1 + 9691 0.66 0.617846
Target:  5'- -cCGC-CCGGCCGCGggugcCCGGGAgacgGGaGCg -3'
miRNA:   3'- acGCGcGGCUGGCGC-----GGCUCUa---CC-CG- -5'
29377 3' -62.8 NC_006151.1 + 43886 0.66 0.617846
Target:  5'- cGCuCGUCGAguCgGCGCgGAGAgGGGUa -3'
miRNA:   3'- aCGcGCGGCU--GgCGCGgCUCUaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 80650 0.66 0.617846
Target:  5'- cGCGC-CCGACaaggaaaaacaCGCGCacgcaGAGAgucUGGGUu -3'
miRNA:   3'- aCGCGcGGCUG-----------GCGCGg----CUCU---ACCCG- -5'
29377 3' -62.8 NC_006151.1 + 105595 0.66 0.617846
Target:  5'- cGCGCGCgGAgCgGCuGCCGcGGUGGa- -3'
miRNA:   3'- aCGCGCGgCU-GgCG-CGGCuCUACCcg -5'
29377 3' -62.8 NC_006151.1 + 27626 0.66 0.617846
Target:  5'- --aGC-CCGGCCGCcCCGAcgGGUGGGg -3'
miRNA:   3'- acgCGcGGCUGGCGcGGCU--CUACCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.