Results 41 - 60 of 472 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29377 | 3' | -62.8 | NC_006151.1 | + | 15087 | 0.66 | 0.598334 |
Target: 5'- gGCGCcCCGACaCGCGgCGccucgGGGCc -3' miRNA: 3'- aCGCGcGGCUG-GCGCgGCucua-CCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 15174 | 0.72 | 0.289071 |
Target: 5'- cGCGCGCCcugcGCCGCGCCcucuuuGAcuuuuacgccaUGGGCu -3' miRNA: 3'- aCGCGCGGc---UGGCGCGGcu----CU-----------ACCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 15900 | 0.68 | 0.464951 |
Target: 5'- cGCGCGCCccgacgcggcccGCCGcCGCCccguGAGgcGGGCc -3' miRNA: 3'- aCGCGCGGc-----------UGGC-GCGG----CUCuaCCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 17096 | 0.67 | 0.521657 |
Target: 5'- cGCGCGcCCGuCgggGCGCCGGGGgcuccgGcGGCg -3' miRNA: 3'- aCGCGC-GGCuGg--CGCGGCUCUa-----C-CCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 17716 | 0.67 | 0.512316 |
Target: 5'- gUGUGCGcCCGGgUGCGCCG----GGGCc -3' miRNA: 3'- -ACGCGC-GGCUgGCGCGGCucuaCCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 18406 | 0.66 | 0.588609 |
Target: 5'- aGC-CGCUGuCCcCGCCGGGGgaggaGGGCc -3' miRNA: 3'- aCGcGCGGCuGGcGCGGCUCUa----CCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 18694 | 0.66 | 0.588609 |
Target: 5'- gGCGCGCgGGCgGCGCCGGcgucGUGacGCc -3' miRNA: 3'- aCGCGCGgCUGgCGCGGCUc---UACc-CG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 18737 | 0.69 | 0.414949 |
Target: 5'- cGCGuCGUCG-CCGcCGCCGGGGccccacgGGGUg -3' miRNA: 3'- aCGC-GCGGCuGGC-GCGGCUCUa------CCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 19020 | 0.73 | 0.258239 |
Target: 5'- cGCGCGCCGgcgaggugaaGCUGCacGCCGGGuccaccGGGCg -3' miRNA: 3'- aCGCGCGGC----------UGGCG--CGGCUCua----CCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 19240 | 0.7 | 0.390413 |
Target: 5'- cUGCGaguggaaGCCGAgCGCGUgGAaGcgGGGCu -3' miRNA: 3'- -ACGCg------CGGCUgGCGCGgCU-CuaCCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 19367 | 0.66 | 0.608082 |
Target: 5'- aGCGUGUagaGGcCCGUGUCGu--UGGGCg -3' miRNA: 3'- aCGCGCGg--CU-GGCGCGGCucuACCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 19413 | 0.69 | 0.431822 |
Target: 5'- gGUGCGgCGAccaCCGCuCCGGGGugacgaUGGGCg -3' miRNA: 3'- aCGCGCgGCU---GGCGcGGCUCU------ACCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 19633 | 0.67 | 0.550056 |
Target: 5'- --gGCGCCGucGCCGCGCgCGucGA-GGGUg -3' miRNA: 3'- acgCGCGGC--UGGCGCG-GCu-CUaCCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 20112 | 0.68 | 0.503044 |
Target: 5'- cGgGCGCCccggcGACgGgGCUGGGGggcGGGCg -3' miRNA: 3'- aCgCGCGG-----CUGgCgCGGCUCUa--CCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 20156 | 0.68 | 0.475686 |
Target: 5'- gGCGCGUgGACCGCcggGCCGcGcccGGGUc -3' miRNA: 3'- aCGCGCGgCUGGCG---CGGCuCua-CCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 20754 | 0.71 | 0.308921 |
Target: 5'- gGCGCGCCuccaccgcggcgGACgCGCGCCGGGcgaGcGGCu -3' miRNA: 3'- aCGCGCGG------------CUG-GCGCGGCUCua-C-CCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 20980 | 0.71 | 0.315764 |
Target: 5'- gGCGCGUCG-CCGgGCaCGAGGacGGCg -3' miRNA: 3'- aCGCGCGGCuGGCgCG-GCUCUacCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 21276 | 0.7 | 0.374592 |
Target: 5'- aGCGCGCCcaucgcgguGcCCGUGCCGAcgaucaccgagcGGUGGcGCg -3' miRNA: 3'- aCGCGCGG---------CuGGCGCGGCU------------CUACC-CG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 21474 | 0.72 | 0.288427 |
Target: 5'- cGCGuCGCCGGCUcgggcagGCgGCCGGGGggcgcGGGCg -3' miRNA: 3'- aCGC-GCGGCUGG-------CG-CGGCUCUa----CCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 21521 | 0.67 | 0.566361 |
Target: 5'- gGCGgGCUcgggcuucggccggGGCCgGgGCCGGGGccUGGGCc -3' miRNA: 3'- aCGCgCGG--------------CUGG-CgCGGCUCU--ACCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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