Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29379 | 5' | -62.3 | NC_006151.1 | + | 75452 | 0.66 | 0.573812 |
Target: 5'- cGUGGCGCGCguagcggUCGGCggccggcuugaagacCCCcAGGGGc- -3' miRNA: 3'- -CACCGCGCGa------AGCCG---------------GGGcUCCUCuu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 73736 | 0.67 | 0.540531 |
Target: 5'- cGUGGCGUaGUagUUGGCCCCGAGaaaguGGGGc -3' miRNA: 3'- -CACCGCG-CGa-AGCCGGGGCUC-----CUCUu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 72706 | 0.72 | 0.272044 |
Target: 5'- -aGGUacugcgcaaaGUGCUccUCGGCCCCGAGGGGc- -3' miRNA: 3'- caCCG----------CGCGA--AGCCGGGGCUCCUCuu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 68880 | 0.66 | 0.550259 |
Target: 5'- -gGGCGCGCc-CGGCCacguCGAGGAc-- -3' miRNA: 3'- caCCGCGCGaaGCCGGg---GCUCCUcuu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 67747 | 0.7 | 0.348188 |
Target: 5'- -cGGCGCGg--CGGCCCCGucGGGGu -3' miRNA: 3'- caCCGCGCgaaGCCGGGGCucCUCUu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 66881 | 0.76 | 0.152539 |
Target: 5'- -gGGCGCGCc-CGGCCCCGcgccGGAGGAc -3' miRNA: 3'- caCCGCGCGaaGCCGGGGCu---CCUCUU- -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 60713 | 0.67 | 0.540531 |
Target: 5'- -cGcCGCGaCcUCGGCCCCGAGGugccGGAGc -3' miRNA: 3'- caCcGCGC-GaAGCCGGGGCUCC----UCUU- -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 60409 | 0.66 | 0.583698 |
Target: 5'- -gGGCGCGCa-CGGCCCagcggcccacguccuCGGGGGGc- -3' miRNA: 3'- caCCGCGCGaaGCCGGG---------------GCUCCUCuu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 55452 | 0.69 | 0.387507 |
Target: 5'- -cGGCGcCGC--CGGCCCCGccGGGGGGc -3' miRNA: 3'- caCCGC-GCGaaGCCGGGGC--UCCUCUu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 54615 | 0.78 | 0.101655 |
Target: 5'- -cGGUGCGCcgggCGcGCCCCGGGGGGAAg -3' miRNA: 3'- caCCGCGCGaa--GC-CGGGGCUCCUCUU- -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 52371 | 0.66 | 0.599581 |
Target: 5'- -cGGCGCGCccccggGGCCCgCGGGGGc-- -3' miRNA: 3'- caCCGCGCGaag---CCGGG-GCUCCUcuu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 52179 | 0.77 | 0.13421 |
Target: 5'- -gGGCGCGCgcgcgaacgCGGCCCCGAagagcucGGAGAGc -3' miRNA: 3'- caCCGCGCGaa-------GCCGGGGCU-------CCUCUU- -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 48969 | 0.69 | 0.429635 |
Target: 5'- cUGGaCGCGCcucaCGGCgCCCGAGGAc-- -3' miRNA: 3'- cACC-GCGCGaa--GCCG-GGGCUCCUcuu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 40086 | 0.66 | 0.589646 |
Target: 5'- -gGGCGC-CggggcCGGCCCCGGcGAGGAc -3' miRNA: 3'- caCCGCGcGaa---GCCGGGGCUcCUCUU- -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 34014 | 0.66 | 0.554165 |
Target: 5'- -cGGCGCGC--CGGCCCgGcccuccccgccgggaAGGGGAc -3' miRNA: 3'- caCCGCGCGaaGCCGGGgC---------------UCCUCUu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 32354 | 0.66 | 0.56004 |
Target: 5'- -aGGCGCcgggGCUUucuuccCGGaCCgCCGGGGAGGAa -3' miRNA: 3'- caCCGCG----CGAA------GCC-GG-GGCUCCUCUU- -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 27151 | 0.67 | 0.511718 |
Target: 5'- -aGGCG-GUUcacgUCGGCCCCGAGGc--- -3' miRNA: 3'- caCCGCgCGA----AGCCGGGGCUCCucuu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 24519 | 0.68 | 0.47434 |
Target: 5'- -gGGCGCcgccacguugcaGCgcgCGGCCCCGAGGu--- -3' miRNA: 3'- caCCGCG------------CGaa-GCCGGGGCUCCucuu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 19275 | 0.67 | 0.502253 |
Target: 5'- cGUGGCGCGCgg-GGCCcaCCGGGGc--- -3' miRNA: 3'- -CACCGCGCGaagCCGG--GGCUCCucuu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 17407 | 0.66 | 0.600576 |
Target: 5'- cGUGGCGCGCggcagcagggccagCGaGCCgggggcgaucuCCGAGGAGc- -3' miRNA: 3'- -CACCGCGCGaa------------GC-CGG-----------GGCUCCUCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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