miRNA display CGI


Results 61 - 80 of 221 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29380 3' -64 NC_006151.1 + 139646 0.67 0.500412
Target:  5'- cGGCGcggGGGUCgCGGCgGgCGCGccgCCCg -3'
miRNA:   3'- cCCGCa--CCCGGaGCCGgU-GCGCa--GGG- -5'
29380 3' -64 NC_006151.1 + 129447 0.67 0.500412
Target:  5'- uGGGCG-GGGCgCaCGGCCGuggGCGggacgagCCCg -3'
miRNA:   3'- -CCCGCaCCCG-GaGCCGGUg--CGCa------GGG- -5'
29380 3' -64 NC_006151.1 + 36384 0.67 0.500412
Target:  5'- aGGcCG-GGGCCcccggCGGCCccggGCGCucGUCCCc -3'
miRNA:   3'- cCC-GCaCCCGGa----GCCGG----UGCG--CAGGG- -5'
29380 3' -64 NC_006151.1 + 13408 0.67 0.491381
Target:  5'- cGGCcaaugggGGaGCCg-GGCC-CGCGUCCCc -3'
miRNA:   3'- cCCGca-----CC-CGGagCCGGuGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 19857 0.67 0.518687
Target:  5'- cGGCGgagaggcucgGGGCCUCGGUgGagaGCG-CCa -3'
miRNA:   3'- cCCGCa---------CCCGGAGCCGgUg--CGCaGGg -5'
29380 3' -64 NC_006151.1 + 112258 0.67 0.526997
Target:  5'- -cGUGUGGGCCagauaauUUaGCUugGCGUCCg -3'
miRNA:   3'- ccCGCACCCGG-------AGcCGGugCGCAGGg -5'
29380 3' -64 NC_006151.1 + 139093 0.67 0.53722
Target:  5'- gGGGCGcgcaUGGcGCuguucacgaccCUCGGCgucaCGCGCGcCCCg -3'
miRNA:   3'- -CCCGC----ACC-CG-----------GAGCCG----GUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 130962 0.67 0.53722
Target:  5'- cGGGCGcggGGGCCgguacccCGGCCGCcCGggCUg -3'
miRNA:   3'- -CCCGCa--CCCGGa------GCCGGUGcGCa-GGg -5'
29380 3' -64 NC_006151.1 + 123929 0.67 0.53722
Target:  5'- cGGGCc---GCCUCGGCCuCGCcgacgCCCg -3'
miRNA:   3'- -CCCGcaccCGGAGCCGGuGCGca---GGG- -5'
29380 3' -64 NC_006151.1 + 113108 0.67 0.53722
Target:  5'- gGGGCG-GGGCCgcggacgCGgacGCCGC-CGggCCCg -3'
miRNA:   3'- -CCCGCaCCCGGa------GC---CGGUGcGCa-GGG- -5'
29380 3' -64 NC_006151.1 + 77102 0.67 0.53722
Target:  5'- -aGCGcGGGCgCggCGGgCGCGCG-CCCa -3'
miRNA:   3'- ccCGCaCCCG-Ga-GCCgGUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 54604 0.67 0.53722
Target:  5'- cGGCGUGGuCCcggUGcGCCggGCGCGcCCCg -3'
miRNA:   3'- cCCGCACCcGGa--GC-CGG--UGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 31729 0.67 0.53722
Target:  5'- gGGGCGUGGagaggcGCC-CGcGCCggggACGCG-CCUg -3'
miRNA:   3'- -CCCGCACC------CGGaGC-CGG----UGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 18492 0.67 0.53722
Target:  5'- -uGCGUGGGCaggcugguguacacCGGCgagagcaUGCGCGUCCCc -3'
miRNA:   3'- ccCGCACCCGga------------GCCG-------GUGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 138530 0.67 0.531635
Target:  5'- gGGGUGaUGGGCgCguacgcCGGCCuggGCGCGUacuacgcgaccgucgCCCg -3'
miRNA:   3'- -CCCGC-ACCCG-Ga-----GCCGG---UGCGCA---------------GGG- -5'
29380 3' -64 NC_006151.1 + 2205 0.67 0.531635
Target:  5'- cGGGCcgGUGGGUCUccacggcgcccccggCGGCgGCGCGgacgcuggUCUCg -3'
miRNA:   3'- -CCCG--CACCCGGA---------------GCCGgUGCGC--------AGGG- -5'
29380 3' -64 NC_006151.1 + 130353 0.67 0.527923
Target:  5'- cGGCGUcGuGGUUgaCGGCCGCGCGcgCCg -3'
miRNA:   3'- cCCGCA-C-CCGGa-GCCGGUGCGCa-GGg -5'
29380 3' -64 NC_006151.1 + 40074 0.67 0.527923
Target:  5'- -cGCGgGGGCCUCGGgCGC-CGgggccggCCCc -3'
miRNA:   3'- ccCGCaCCCGGAGCCgGUGcGCa------GGG- -5'
29380 3' -64 NC_006151.1 + 126081 0.67 0.527923
Target:  5'- gGGGcCGUGaucucGGCCgUCGGCgGCaugGUGUCCUu -3'
miRNA:   3'- -CCC-GCAC-----CCGG-AGCCGgUG---CGCAGGG- -5'
29380 3' -64 NC_006151.1 + 100891 0.67 0.527923
Target:  5'- aGGUGcUGcGCCgCGGCgCGCGCGcgCCCg -3'
miRNA:   3'- cCCGC-ACcCGGaGCCG-GUGCGCa-GGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.