Results 61 - 80 of 221 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29380 | 3' | -64 | NC_006151.1 | + | 106481 | 0.66 | 0.594006 |
Target: 5'- uGGGCGcacacggagacGGGCCagCGGCUggcGCGCG-CCg -3' miRNA: 3'- -CCCGCa----------CCCGGa-GCCGG---UGCGCaGGg -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 105689 | 0.78 | 0.113359 |
Target: 5'- cGGCGcgGGGCCgacgccggcgCGGCCGCGCGcCUCg -3' miRNA: 3'- cCCGCa-CCCGGa---------GCCGGUGCGCaGGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 104460 | 0.66 | 0.553152 |
Target: 5'- -cGcCGUGGGCUUCgucggggcggacauGGCgCACGUGcCCCg -3' miRNA: 3'- ccC-GCACCCGGAG--------------CCG-GUGCGCaGGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 103826 | 0.67 | 0.538153 |
Target: 5'- uGGCG-GcGGCCguggagaugcucgggCGGCUGCGCGcgcagCCCg -3' miRNA: 3'- cCCGCaC-CCGGa--------------GCCGGUGCGCa----GGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 101462 | 0.69 | 0.422139 |
Target: 5'- uGGGCcUGGGCCUCuaccGCCGCGgcgaCGUCg- -3' miRNA: 3'- -CCCGcACCCGGAGc---CGGUGC----GCAGgg -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 101166 | 0.69 | 0.4139 |
Target: 5'- cGGCGUGGagGCCgcccugaCGGCCgacgccguggACGCGUgCCu -3' miRNA: 3'- cCCGCACC--CGGa------GCCGG----------UGCGCAgGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 100891 | 0.67 | 0.527923 |
Target: 5'- aGGUGcUGcGCCgCGGCgCGCGCGcgCCCg -3' miRNA: 3'- cCCGC-ACcCGGaGCCG-GUGCGCa-GGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 100481 | 0.72 | 0.277506 |
Target: 5'- aGGCGcUGGGCCUgcaGGCgCcCGUGUUCCg -3' miRNA: 3'- cCCGC-ACCCGGAg--CCG-GuGCGCAGGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 100290 | 0.67 | 0.482427 |
Target: 5'- cGGGCGcacGGCCUCcGUCuuCGCG-CCCg -3' miRNA: 3'- -CCCGCac-CCGGAGcCGGu-GCGCaGGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 98952 | 0.7 | 0.374231 |
Target: 5'- cGGCGcGGGCCguggacgaggCGGCgCugGUG-CCCg -3' miRNA: 3'- cCCGCaCCCGGa---------GCCG-GugCGCaGGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 98359 | 0.72 | 0.277506 |
Target: 5'- cGGGCGUgcgcGGGCuCUgGGCgCGCGCGcugcgCCUg -3' miRNA: 3'- -CCCGCA----CCCG-GAgCCG-GUGCGCa----GGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 97375 | 0.72 | 0.271418 |
Target: 5'- cGGGCGcggcggGGGCgUCGGCCu--CGUCCg -3' miRNA: 3'- -CCCGCa-----CCCGgAGCCGGugcGCAGGg -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 96153 | 0.68 | 0.447436 |
Target: 5'- -cGCGUcaaaGaCCUCgGGCCACGCGUCCg -3' miRNA: 3'- ccCGCAc---CcGGAG-CCGGUGCGCAGGg -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 95439 | 0.66 | 0.555978 |
Target: 5'- uGGCGaGGGCggC-GCCGCGCGUgUCCg -3' miRNA: 3'- cCCGCaCCCGgaGcCGGUGCGCA-GGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 93739 | 0.69 | 0.381179 |
Target: 5'- uGGUGgaugcGGGCCUCGucggggcGCgGgGCGUCCCc -3' miRNA: 3'- cCCGCa----CCCGGAGC-------CGgUgCGCAGGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 92749 | 0.66 | 0.57492 |
Target: 5'- cGGcGCGgcacGGGCaccugagCGuGCUgcgGCGCGUCCCc -3' miRNA: 3'- -CC-CGCa---CCCGga-----GC-CGG---UGCGCAGGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 90652 | 0.69 | 0.389787 |
Target: 5'- uGGGCGUguacaugcgcgGGGCggCgGGCCGCuuGUCCCc -3' miRNA: 3'- -CCCGCA-----------CCCGgaG-CCGGUGcgCAGGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 88727 | 0.7 | 0.341517 |
Target: 5'- cGGCGUccGCCgCGGCCACGCGcacggacaccucgCCCg -3' miRNA: 3'- cCCGCAccCGGaGCCGGUGCGCa------------GGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 88308 | 0.76 | 0.142597 |
Target: 5'- gGGGCGcaGGGCCUCggagaagcgcugcgaGGCCACGCuGUCgCg -3' miRNA: 3'- -CCCGCa-CCCGGAG---------------CCGGUGCG-CAGgG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 87339 | 0.76 | 0.141224 |
Target: 5'- cGGGCcugccGGGCCUCcagGGCCugGCGgccCCCg -3' miRNA: 3'- -CCCGca---CCCGGAG---CCGGugCGCa--GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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