Results 41 - 60 of 221 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29380 | 3' | -64 | NC_006151.1 | + | 60408 | 0.66 | 0.594006 |
Target: 5'- aGGGCGcgcacGGCCcagCGGCC-CaCGUCCUc -3' miRNA: 3'- -CCCGCac---CCGGa--GCCGGuGcGCAGGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 36731 | 0.66 | 0.594006 |
Target: 5'- aGGCGgcucgauCCUCGGCCGCuugGCG-CCCg -3' miRNA: 3'- cCCGCaccc---GGAGCCGGUG---CGCaGGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 37940 | 0.66 | 0.594006 |
Target: 5'- -cGCGca-GCC-CGGCCGCGUGcCCCg -3' miRNA: 3'- ccCGCaccCGGaGCCGGUGCGCaGGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 78394 | 0.66 | 0.594006 |
Target: 5'- gGGGCGgccacgGcGGCuCUCgGGCCGCgaGCGccguggCCCa -3' miRNA: 3'- -CCCGCa-----C-CCG-GAG-CCGGUG--CGCa-----GGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 75113 | 0.66 | 0.594006 |
Target: 5'- cGGGCGccagcagcuGGUCggCGGCCggcgGCGCGgCCCa -3' miRNA: 3'- -CCCGCac-------CCGGa-GCCGG----UGCGCaGGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 81571 | 0.66 | 0.584448 |
Target: 5'- uGGuGCGgagcaGGGUCUCG--CGCGCGUCgCCg -3' miRNA: 3'- -CC-CGCa----CCCGGAGCcgGUGCGCAG-GG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 19057 | 0.66 | 0.584448 |
Target: 5'- cGGGCGcaGGCaCUCGGgCGCGCG-Cg- -3' miRNA: 3'- -CCCGCacCCG-GAGCCgGUGCGCaGgg -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 56317 | 0.66 | 0.565429 |
Target: 5'- cGGUGccugagccUGGGCCggUGGCUggagcgcgcGCGCGcCCCg -3' miRNA: 3'- cCCGC--------ACCCGGa-GCCGG---------UGCGCaGGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 69577 | 0.66 | 0.565429 |
Target: 5'- cGGGUGccGcGCCgcgacgagcUCGGCCGCGCGgcgCaCCa -3' miRNA: 3'- -CCCGCacC-CGG---------AGCCGGUGCGCa--G-GG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 65827 | 0.66 | 0.569221 |
Target: 5'- uGGGCGgccgcgccagcgcGGCC-CGGCuCACGCcUCCUc -3' miRNA: 3'- -CCCGCac-----------CCGGaGCCG-GUGCGcAGGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 13998 | 0.66 | 0.57492 |
Target: 5'- gGGGCccacguGUGaGGCCcCGGCCAaUGgG-CCCg -3' miRNA: 3'- -CCCG------CAC-CCGGaGCCGGU-GCgCaGGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 62287 | 0.66 | 0.57492 |
Target: 5'- -uGCGUGcucguGGCCagcgCGGCCuucgGCGUGUCCg -3' miRNA: 3'- ccCGCAC-----CCGGa---GCCGG----UGCGCAGGg -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 92749 | 0.66 | 0.57492 |
Target: 5'- cGGcGCGgcacGGGCaccugagCGuGCUgcgGCGCGUCCCc -3' miRNA: 3'- -CC-CGCa---CCCGga-----GC-CGG---UGCGCAGGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 14673 | 0.66 | 0.57492 |
Target: 5'- cGGCGUcggGGaGCCUcgcccacccaccCGGCC-CcCGUCCCa -3' miRNA: 3'- cCCGCA---CC-CGGA------------GCCGGuGcGCAGGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 22272 | 0.66 | 0.57492 |
Target: 5'- cGGGCGggGGGaaggUCGGCgcgggCACGgCGUCCa -3' miRNA: 3'- -CCCGCa-CCCgg--AGCCG-----GUGC-GCAGGg -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 66868 | 0.66 | 0.57492 |
Target: 5'- gGGGCGgcgcgaaGGGCgCgccCGGCCcCGCG-CCg -3' miRNA: 3'- -CCCGCa------CCCG-Ga--GCCGGuGCGCaGGg -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 84397 | 0.66 | 0.578728 |
Target: 5'- cGGGCGgggagcgggUGGGCgcggugauaaggcggCgcgCGGCgGCGCGcggCCCa -3' miRNA: 3'- -CCCGC---------ACCCG---------------Ga--GCCGgUGCGCa--GGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 10290 | 0.66 | 0.584448 |
Target: 5'- aGGCGgcGGGCa-CGuCC-CGCGUCCCc -3' miRNA: 3'- cCCGCa-CCCGgaGCcGGuGCGCAGGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 81678 | 0.66 | 0.584448 |
Target: 5'- cGGCGguacGCCUCGGCgACG-GUCgCCc -3' miRNA: 3'- cCCGCacc-CGGAGCCGgUGCgCAG-GG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 84572 | 0.66 | 0.584448 |
Target: 5'- -aGCGaGGGCCUCGa-CGCGCGcCUCg -3' miRNA: 3'- ccCGCaCCCGGAGCcgGUGCGCaGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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