miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 3' -53.9 NC_006151.1 + 33096 0.66 0.966647
Target:  5'- gGCGguggaggggGGAgAgGAAGGucugGGCGCgugCCGCGg -3'
miRNA:   3'- -CGCa--------CCUgUgCUUCU----UCGCGa--GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 30896 0.66 0.966647
Target:  5'- gGCGagcGGAgCGCGcGGuAGCGC-CCGCGg -3'
miRNA:   3'- -CGCa--CCU-GUGCuUCuUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 142107 0.66 0.966647
Target:  5'- uGCGcGGGCugGguGAAGCcCaCCGCGa -3'
miRNA:   3'- -CGCaCCUGugCuuCUUCGcGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 52374 0.66 0.966647
Target:  5'- cGCGcccccgGGGCccGCGggGGcggcgGGCGCcgCCGCGc -3'
miRNA:   3'- -CGCa-----CCUG--UGCuuCU-----UCGCGa-GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 17273 0.66 0.966647
Target:  5'- cGCGgGGGCGggcUGAuacGGAGGgGCUCCcCGg -3'
miRNA:   3'- -CGCaCCUGU---GCU---UCUUCgCGAGGuGC- -5'
29381 3' -53.9 NC_006151.1 + 100699 0.66 0.966647
Target:  5'- cGCGagaccUGGACcgaggcgcGCGAGGAgcaGGCGCcgcCCGCGc -3'
miRNA:   3'- -CGC-----ACCUG--------UGCUUCU---UCGCGa--GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 139641 0.66 0.963352
Target:  5'- gGCGccGGCGCGggGGucgcggcgGGCGCgCCGCc -3'
miRNA:   3'- -CGCacCUGUGCuuCU--------UCGCGaGGUGc -5'
29381 3' -53.9 NC_006151.1 + 34619 0.66 0.963352
Target:  5'- aGCGcGaGGCGCGGGuGggGCGa-CCGCGg -3'
miRNA:   3'- -CGCaC-CUGUGCUU-CuuCGCgaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 95026 0.66 0.960198
Target:  5'- cGCGUaGcGGCugugcucgaagccguCGAAGggGCGCaggCCGCGc -3'
miRNA:   3'- -CGCA-C-CUGu--------------GCUUCuuCGCGa--GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 130731 0.66 0.959836
Target:  5'- cGCGcGGcCGCGgcGcAGCGCcacCCACGa -3'
miRNA:   3'- -CGCaCCuGUGCuuCuUCGCGa--GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 4217 0.66 0.959836
Target:  5'- gGCGgccgGGGCGCGGGcGGGCGCgggcagCCggaGCGg -3'
miRNA:   3'- -CGCa---CCUGUGCUUcUUCGCGa-----GG---UGC- -5'
29381 3' -53.9 NC_006151.1 + 20525 0.66 0.959836
Target:  5'- gGCGUGGugaACACGgcGuccucGGCGgggUCCACGa -3'
miRNA:   3'- -CGCACC---UGUGCuuCu----UCGCg--AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 2485 0.66 0.959836
Target:  5'- cGCGcGGuGCcCGAAGGcGGCGC-CCGCGu -3'
miRNA:   3'- -CGCaCC-UGuGCUUCU-UCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 73040 0.66 0.959836
Target:  5'- gGCgGUGG-CGCGGuGGggGUGCgcggggUCCGCGu -3'
miRNA:   3'- -CG-CACCuGUGCU-UCuuCGCG------AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 109754 0.66 0.959836
Target:  5'- cCGUGGcCGCcgccguuGGAGGCGC-CCGCa -3'
miRNA:   3'- cGCACCuGUGcu-----UCUUCGCGaGGUGc -5'
29381 3' -53.9 NC_006151.1 + 127372 0.66 0.959836
Target:  5'- gGCGgGGAcCGCGggGGuGGCGggggCCGCGg -3'
miRNA:   3'- -CGCaCCU-GUGCuuCU-UCGCga--GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 128070 0.66 0.959836
Target:  5'- cGCGgGGGCGacCGAcaGGAAGCGCaugucCCGCu -3'
miRNA:   3'- -CGCaCCUGU--GCU--UCUUCGCGa----GGUGc -5'
29381 3' -53.9 NC_006151.1 + 138696 0.66 0.959836
Target:  5'- ---cGGACGCGcuGAgcccGGCGCUgCGCGc -3'
miRNA:   3'- cgcaCCUGUGCuuCU----UCGCGAgGUGC- -5'
29381 3' -53.9 NC_006151.1 + 88826 0.66 0.958738
Target:  5'- gGCGagGGAgGCGuuggcggagcugaaGAGGAGcCGCUcCCGCGg -3'
miRNA:   3'- -CGCa-CCUgUGC--------------UUCUUC-GCGA-GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 96765 0.66 0.956095
Target:  5'- gGCGUGugcucGACACGggGAGGUGa---GCGg -3'
miRNA:   3'- -CGCAC-----CUGUGCuuCUUCGCgaggUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.