miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 3' -53.9 NC_006151.1 + 122958 0.66 0.952124
Target:  5'- cGCGggGGGCGCGGacgccggcgacGGggGCG-UCgGCGa -3'
miRNA:   3'- -CGCa-CCUGUGCU-----------UCuuCGCgAGgUGC- -5'
29381 3' -53.9 NC_006151.1 + 122505 0.74 0.596684
Target:  5'- cGCGccGGCGCGcGGAcGCGCUCCugGa -3'
miRNA:   3'- -CGCacCUGUGCuUCUuCGCGAGGugC- -5'
29381 3' -53.9 NC_006151.1 + 122421 0.7 0.839221
Target:  5'- cCGUGGACGCcgccgaggcccggGAggcGGAGGCGgCgUCCACGg -3'
miRNA:   3'- cGCACCUGUG-------------CU---UCUUCGC-G-AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 122374 0.69 0.871375
Target:  5'- ---cGGGCuCGAcGAGGCGCgCCGCGg -3'
miRNA:   3'- cgcaCCUGuGCUuCUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 122045 0.76 0.476998
Target:  5'- cGCGUGGAgACGGAGcuGCaguucCUCCACGa -3'
miRNA:   3'- -CGCACCUgUGCUUCuuCGc----GAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 120787 0.67 0.923288
Target:  5'- ---cGGACGCGGccgacgcGGAGCGCgCCGCGc -3'
miRNA:   3'- cgcaCCUGUGCUu------CUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 120715 0.68 0.899216
Target:  5'- aCGgGGAuCACGAugcagucGAAGCGC-CCGCGg -3'
miRNA:   3'- cGCaCCU-GUGCUu------CUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 120377 0.67 0.943476
Target:  5'- aGCGcccGGACACGGccguGGAcGUGCUCaACGg -3'
miRNA:   3'- -CGCa--CCUGUGCU----UCUuCGCGAGgUGC- -5'
29381 3' -53.9 NC_006151.1 + 120049 0.68 0.911131
Target:  5'- gGCGUgcuccacGGGCAgcccgUGGAGggGCGCaacuUCCGCa -3'
miRNA:   3'- -CGCA-------CCUGU-----GCUUCuuCGCG----AGGUGc -5'
29381 3' -53.9 NC_006151.1 + 118940 0.69 0.871375
Target:  5'- aGCGccGACGCGGcgcugucgcuGGAGGCGCUCguCGc -3'
miRNA:   3'- -CGCacCUGUGCU----------UCUUCGCGAGguGC- -5'
29381 3' -53.9 NC_006151.1 + 118773 0.68 0.905595
Target:  5'- uGCGgaaccUGGACGCGguGgcGCGCggCGCGg -3'
miRNA:   3'- -CGC-----ACCUGUGCuuCuuCGCGagGUGC- -5'
29381 3' -53.9 NC_006151.1 + 118574 0.71 0.759101
Target:  5'- ---cGGGCACGAGGcguGGCGCgugCCGCu -3'
miRNA:   3'- cgcaCCUGUGCUUCu--UCGCGa--GGUGc -5'
29381 3' -53.9 NC_006151.1 + 118432 0.68 0.914123
Target:  5'- ---cGGGCGCGGAGGuguGCGCgcggcucggccuggCCGCGg -3'
miRNA:   3'- cgcaCCUGUGCUUCUu--CGCGa-------------GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 117495 0.67 0.943476
Target:  5'- aCGUGGAaGCGcucGAAGCGCggacUCACGg -3'
miRNA:   3'- cGCACCUgUGCuu-CUUCGCGa---GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 117423 0.66 0.947919
Target:  5'- aGCGUGacCACcgugccguuGggGAAGCGCgggUCCGCGc -3'
miRNA:   3'- -CGCACcuGUG---------CuuCUUCGCG---AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 116115 0.67 0.933362
Target:  5'- gGCGcGGcgcuugucgggcaGCACGAAGccGCGCgagcCCGCGa -3'
miRNA:   3'- -CGCaCC-------------UGUGCUUCuuCGCGa---GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 115607 0.68 0.899216
Target:  5'- cGCGUGGcccagcgcgucuGCACGuAGucGCGCguggCCACc -3'
miRNA:   3'- -CGCACC------------UGUGCuUCuuCGCGa---GGUGc -5'
29381 3' -53.9 NC_006151.1 + 115168 0.67 0.933868
Target:  5'- gGCGaagccGCGCGGcaGGggGCGCUCCAg- -3'
miRNA:   3'- -CGCacc--UGUGCU--UCuuCGCGAGGUgc -5'
29381 3' -53.9 NC_006151.1 + 114947 0.71 0.787443
Target:  5'- gGgGUGGGCGCGAugaugacguAGGAcacGCGCUCCuuGa -3'
miRNA:   3'- -CgCACCUGUGCU---------UCUU---CGCGAGGugC- -5'
29381 3' -53.9 NC_006151.1 + 113177 0.67 0.933868
Target:  5'- aCGUGGcCACGggGGAGCcCaaCGCGc -3'
miRNA:   3'- cGCACCuGUGCuuCUUCGcGagGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.