miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 3' -53.5 NC_006151.1 + 68957 0.65 0.97062
Target:  5'- gGCUcGCggcgcacggacucgCGGACGcCGGCCAgCAGCGcGCg -3'
miRNA:   3'- -CGAaCG--------------GCUUGCaGCUGGU-GUCGU-CG- -5'
29384 3' -53.5 NC_006151.1 + 57879 0.65 0.97062
Target:  5'- ---cGCCGGcagACGUCGcagcgcaggcgcagGCCGCAGCucacgGGCc -3'
miRNA:   3'- cgaaCGGCU---UGCAGC--------------UGGUGUCG-----UCG- -5'
29384 3' -53.5 NC_006151.1 + 137105 0.65 0.97062
Target:  5'- uGCUgGCCGGggacgccugggggcGCG-CGACgGC-GCGGCg -3'
miRNA:   3'- -CGAaCGGCU--------------UGCaGCUGgUGuCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 135955 0.66 0.968517
Target:  5'- cGCggcGCgGGACGUCcucgaGGCCAUggacgaGGCGGCc -3'
miRNA:   3'- -CGaa-CGgCUUGCAG-----CUGGUG------UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 74425 0.66 0.968517
Target:  5'- --gUGCUGAAagugcgcgcCGUUGACgCGCAGCuccGGCa -3'
miRNA:   3'- cgaACGGCUU---------GCAGCUG-GUGUCG---UCG- -5'
29384 3' -53.5 NC_006151.1 + 58141 0.66 0.968517
Target:  5'- ---cGCCGuACG-CGGCCGCgugccaccGGCGGUa -3'
miRNA:   3'- cgaaCGGCuUGCaGCUGGUG--------UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 19175 0.66 0.968517
Target:  5'- cGCgaGUCGcccAUGUCcgaGACCACGcGCGGCa -3'
miRNA:   3'- -CGaaCGGCu--UGCAG---CUGGUGU-CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 53367 0.66 0.968517
Target:  5'- uGCgucgUGUCGuacgcGGCGUUGAUCAgccacCAGCAGUa -3'
miRNA:   3'- -CGa---ACGGC-----UUGCAGCUGGU-----GUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 11052 0.66 0.968517
Target:  5'- gGCccgGCCuGGACG-CgGGCCACAcuguGCGGCg -3'
miRNA:   3'- -CGaa-CGG-CUUGCaG-CUGGUGU----CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 101357 0.66 0.968208
Target:  5'- cGCccGCCGAGgGUUuccagagcacgcaGAUCACGGCGcGCg -3'
miRNA:   3'- -CGaaCGGCUUgCAG-------------CUGGUGUCGU-CG- -5'
29384 3' -53.5 NC_006151.1 + 90870 0.66 0.967584
Target:  5'- ---aGuuGAACGUgagcucggcguuccCGGCCcgcagccgcuGCAGCAGCg -3'
miRNA:   3'- cgaaCggCUUGCA--------------GCUGG----------UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 81383 0.66 0.96533
Target:  5'- cGCgaGCCGcGCcgcggcgcccagGUUGGCCAgGGUGGCg -3'
miRNA:   3'- -CGaaCGGCuUG------------CAGCUGGUgUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 59734 0.66 0.96533
Target:  5'- gGgUUGgCGAGCG-CG--CGCAGCAGCu -3'
miRNA:   3'- -CgAACgGCUUGCaGCugGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 36118 0.66 0.96533
Target:  5'- ---cGCCGuccuCG-CGGCCGCGGCcggAGCc -3'
miRNA:   3'- cgaaCGGCuu--GCaGCUGGUGUCG---UCG- -5'
29384 3' -53.5 NC_006151.1 + 22790 0.66 0.96533
Target:  5'- cGCgcacgUGCUGGGcCGUcucccCGGCCGuCAGguGCa -3'
miRNA:   3'- -CGa----ACGGCUU-GCA-----GCUGGU-GUCguCG- -5'
29384 3' -53.5 NC_006151.1 + 650 0.66 0.96533
Target:  5'- gGCUUcCgGGGCG-CGGCCGgGGCGGg -3'
miRNA:   3'- -CGAAcGgCUUGCaGCUGGUgUCGUCg -5'
29384 3' -53.5 NC_006151.1 + 123030 0.66 0.96533
Target:  5'- ---cGCCGuGGCGUgggcggaccugcCGGCCGCGGCGcuGCg -3'
miRNA:   3'- cgaaCGGC-UUGCA------------GCUGGUGUCGU--CG- -5'
29384 3' -53.5 NC_006151.1 + 99592 0.66 0.96533
Target:  5'- gGCggcgGCCGAGCGcCGcgccgggcugGCgCACAGCGccGCg -3'
miRNA:   3'- -CGaa--CGGCUUGCaGC----------UG-GUGUCGU--CG- -5'
29384 3' -53.5 NC_006151.1 + 96390 0.66 0.96533
Target:  5'- cGCgcggUGCCGGcgcACGgCGGCCGCcaccGCGGg -3'
miRNA:   3'- -CGa---ACGGCU---UGCaGCUGGUGu---CGUCg -5'
29384 3' -53.5 NC_006151.1 + 86821 0.66 0.96533
Target:  5'- cGCccgGCCca--GUgCGGCCAUGGCAGCc -3'
miRNA:   3'- -CGaa-CGGcuugCA-GCUGGUGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.