miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 5' -61 NC_006151.1 + 98656 0.66 0.749681
Target:  5'- cGGGCG-CGCGCUCcgccgacgaCGUCCuGGCc -3'
miRNA:   3'- cCCCGCaGCGCGAGca-------GCAGGcUCGc -5'
29384 5' -61 NC_006151.1 + 95445 0.66 0.749681
Target:  5'- gGGcGGCGcCGCGCg---UGUCCGuGUGg -3'
miRNA:   3'- -CC-CCGCaGCGCGagcaGCAGGCuCGC- -5'
29384 5' -61 NC_006151.1 + 4223 0.66 0.749681
Target:  5'- cGGGGCG-CGgGCgggCG-CGggcagCCgGAGCGg -3'
miRNA:   3'- -CCCCGCaGCgCGa--GCaGCa----GG-CUCGC- -5'
29384 5' -61 NC_006151.1 + 89663 0.66 0.749681
Target:  5'- aGGuGGCG-CGUGCUCGggCG-CacaaaGAGCGa -3'
miRNA:   3'- -CC-CCGCaGCGCGAGCa-GCaGg----CUCGC- -5'
29384 5' -61 NC_006151.1 + 113107 0.66 0.749681
Target:  5'- gGGGGCGgggcCGCGgaCG-CGgacgccgCCGGGCc -3'
miRNA:   3'- -CCCCGCa---GCGCgaGCaGCa------GGCUCGc -5'
29384 5' -61 NC_006151.1 + 43382 0.66 0.740446
Target:  5'- gGGGGCGgugguggcCGuCGCUCGUgG-CCG-GCa -3'
miRNA:   3'- -CCCCGCa-------GC-GCGAGCAgCaGGCuCGc -5'
29384 5' -61 NC_006151.1 + 55891 0.66 0.740446
Target:  5'- -cGGCGgacgUGCGC-CGggCGaCCGAGCGg -3'
miRNA:   3'- ccCCGCa---GCGCGaGCa-GCaGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 84660 0.66 0.740446
Target:  5'- cGGGCG-CGCGcCUCGagG-CCGAGg- -3'
miRNA:   3'- cCCCGCaGCGC-GAGCagCaGGCUCgc -5'
29384 5' -61 NC_006151.1 + 111454 0.66 0.740446
Target:  5'- aGGaGGCGcUGCGUcugcgaggCGUCGUCgGGGCc -3'
miRNA:   3'- -CC-CCGCaGCGCGa-------GCAGCAGgCUCGc -5'
29384 5' -61 NC_006151.1 + 2918 0.66 0.740446
Target:  5'- -cGGCGcCGCGC-CG-CG-CCGAGCc -3'
miRNA:   3'- ccCCGCaGCGCGaGCaGCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 5623 0.66 0.740446
Target:  5'- gGGGGCG-C-CGC-CGcCG-CCGGGCGc -3'
miRNA:   3'- -CCCCGCaGcGCGaGCaGCaGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 139217 0.66 0.739518
Target:  5'- uGGcGGCGacgcugccgcacaUCGCGCgCGUC-UCCGGcGCGa -3'
miRNA:   3'- -CC-CCGC-------------AGCGCGaGCAGcAGGCU-CGC- -5'
29384 5' -61 NC_006151.1 + 117197 0.66 0.737658
Target:  5'- gGGGGCGUCguaguaguagacggGCGCggCGUCGa-CGAcGCGc -3'
miRNA:   3'- -CCCCGCAG--------------CGCGa-GCAGCagGCU-CGC- -5'
29384 5' -61 NC_006151.1 + 115569 0.66 0.731125
Target:  5'- cGGGCGggCGCGCgggcagGUCGcgCuCGAGCa -3'
miRNA:   3'- cCCCGCa-GCGCGag----CAGCa-G-GCUCGc -5'
29384 5' -61 NC_006151.1 + 97847 0.66 0.730189
Target:  5'- --uGCG-CGCGCagcgCGUCGUCCGcguucucGGCGg -3'
miRNA:   3'- cccCGCaGCGCGa---GCAGCAGGC-------UCGC- -5'
29384 5' -61 NC_006151.1 + 70874 0.66 0.725495
Target:  5'- cGGGCGccuccgccgacgagaUCGCGCgcugCGUCGUgCGcugccuGGCGc -3'
miRNA:   3'- cCCCGC---------------AGCGCGa---GCAGCAgGC------UCGC- -5'
29384 5' -61 NC_006151.1 + 115209 0.66 0.721727
Target:  5'- cGGGCG-CGCGCgCGaUCGUggccgcugccgCCGAGaCGg -3'
miRNA:   3'- cCCCGCaGCGCGaGC-AGCA-----------GGCUC-GC- -5'
29384 5' -61 NC_006151.1 + 131444 0.66 0.721727
Target:  5'- cGGGCGgCGgGCggaa-GUCCGGGCGc -3'
miRNA:   3'- cCCCGCaGCgCGagcagCAGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 57537 0.66 0.721727
Target:  5'- cGGcGCGgccgCGgGCaCGUCG-CCGAGCa -3'
miRNA:   3'- cCC-CGCa---GCgCGaGCAGCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 83371 0.66 0.720783
Target:  5'- cGGGCG-CGCaggcgccgcagguGCUCGUCcggGUCC-AGCGa -3'
miRNA:   3'- cCCCGCaGCG-------------CGAGCAG---CAGGcUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.