miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 3' -58.9 NC_006151.1 + 56205 0.66 0.785205
Target:  5'- gGCGCUGCcgcACCgCCu----GGCCCUGg -3'
miRNA:   3'- -CGCGGCGu--UGG-GGuacuuCCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 37731 0.66 0.785205
Target:  5'- -gGCCGCccagGACCCgCucu-GGGCCCUGc -3'
miRNA:   3'- cgCGGCG----UUGGG-GuacuUCCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 13475 0.66 0.785205
Target:  5'- cGgGCCGgAccGCCCCGccGAcucGGGUCCUGg -3'
miRNA:   3'- -CgCGGCgU--UGGGGUa-CU---UCCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 5976 0.66 0.785205
Target:  5'- cGUGCuCGgAGCCUgAUGGAGaGCCCg-- -3'
miRNA:   3'- -CGCG-GCgUUGGGgUACUUC-CGGGaca -5'
29385 3' -58.9 NC_006151.1 + 5626 0.66 0.785205
Target:  5'- gGCGCCGCcGCCgCCGggcgccGAGaccGGCCCg-- -3'
miRNA:   3'- -CGCGGCGuUGG-GGUa-----CUU---CCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 141649 0.66 0.785205
Target:  5'- gGCGCgGCGggGCCCCGcgggcucguugUGGAGGCauguCUGc -3'
miRNA:   3'- -CGCGgCGU--UGGGGU-----------ACUUCCGg---GACa -5'
29385 3' -58.9 NC_006151.1 + 27173 0.66 0.784294
Target:  5'- gGCGCCGCGugucgggGCgCCA-GggGGCCg--- -3'
miRNA:   3'- -CGCGGCGU-------UGgGGUaCuuCCGGgaca -5'
29385 3' -58.9 NC_006151.1 + 132867 0.66 0.776033
Target:  5'- gGgGCCGCGccCCCCAgcAGGGCCUcGUc -3'
miRNA:   3'- -CgCGGCGUu-GGGGUacUUCCGGGaCA- -5'
29385 3' -58.9 NC_006151.1 + 8611 0.66 0.776033
Target:  5'- gGgGCCGguGCgggUGUGAGGGUCCUGUg -3'
miRNA:   3'- -CgCGGCguUGgg-GUACUUCCGGGACA- -5'
29385 3' -58.9 NC_006151.1 + 39535 0.66 0.776033
Target:  5'- -gGCCuGCuucGCCCgCGUGGAGGCCUc-- -3'
miRNA:   3'- cgCGG-CGu--UGGG-GUACUUCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 49582 0.66 0.776033
Target:  5'- cGCGCuCGCcggcGCCCCGgccagcgcgcUGccGGUCCUGg -3'
miRNA:   3'- -CGCG-GCGu---UGGGGU----------ACuuCCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 37223 0.66 0.776033
Target:  5'- cCGCCGCGGCCuCCccGGccccGGCCCcGg -3'
miRNA:   3'- cGCGGCGUUGG-GGuaCUu---CCGGGaCa -5'
29385 3' -58.9 NC_006151.1 + 60412 0.66 0.776033
Target:  5'- cGCGCacggcccaGCGGCCCaCGUccucgGggGGCCgCUGc -3'
miRNA:   3'- -CGCGg-------CGUUGGG-GUA-----CuuCCGG-GACa -5'
29385 3' -58.9 NC_006151.1 + 60712 0.66 0.776033
Target:  5'- cCGCCGCGACCUCGgccccGAGGuGCCg--- -3'
miRNA:   3'- cGCGGCGUUGGGGUa----CUUC-CGGgaca -5'
29385 3' -58.9 NC_006151.1 + 138343 0.66 0.770469
Target:  5'- aCGCgCGCAGCCCgCcgGcccgcaccuucguGGCCCUGa -3'
miRNA:   3'- cGCG-GCGUUGGG-GuaCuu-----------CCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 88398 0.66 0.766735
Target:  5'- gGCGuCCGCGGCCgCG---AGGCCCgGg -3'
miRNA:   3'- -CGC-GGCGUUGGgGUacuUCCGGGaCa -5'
29385 3' -58.9 NC_006151.1 + 82625 0.66 0.76486
Target:  5'- gGCGCCGCGgugggcgcgggACCCCccugcggcgagGgcGGCCCa-- -3'
miRNA:   3'- -CGCGGCGU-----------UGGGGua---------CuuCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 37477 0.66 0.757319
Target:  5'- cGCGCCGCGGCC------GGGCCCg-- -3'
miRNA:   3'- -CGCGGCGUUGGgguacuUCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 133451 0.66 0.757319
Target:  5'- gGCGCuCuuGGCCCCGgucGAGGCCCg-- -3'
miRNA:   3'- -CGCG-GcgUUGGGGUac-UUCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 119595 0.66 0.757319
Target:  5'- cGCGCCGacggAGCCCCAUGGGcGUCUUc- -3'
miRNA:   3'- -CGCGGCg---UUGGGGUACUUcCGGGAca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.