miRNA display CGI


Results 1 - 20 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 5' -54.3 NC_006151.1 + 12355 0.66 0.961871
Target:  5'- gGGCGggGAgCGCgagCGGGaGAaGGuuGGCg -3'
miRNA:   3'- gCUGCuuCU-GCGa--GUUC-CU-CCugCCG- -5'
29385 5' -54.3 NC_006151.1 + 45174 0.66 0.961871
Target:  5'- gGACGggGugGCgugcccgcCAccacGGACGGCg -3'
miRNA:   3'- gCUGCuuCugCGa-------GUuccuCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 73328 0.66 0.961871
Target:  5'- gGGCGggGcgccGCGCguggCGAaGAGGuucuGCGGCa -3'
miRNA:   3'- gCUGCuuC----UGCGa---GUUcCUCC----UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 85236 0.66 0.961871
Target:  5'- gGACGcgcugagccAGGCGCUgGccGAGGGCGGg -3'
miRNA:   3'- gCUGCu--------UCUGCGAgUucCUCCUGCCg -5'
29385 5' -54.3 NC_006151.1 + 88167 0.66 0.961871
Target:  5'- -cGCGcAGGCGC-CGAGGuGGuagacggugucgGCGGCg -3'
miRNA:   3'- gcUGCuUCUGCGaGUUCCuCC------------UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 95427 0.66 0.961871
Target:  5'- aGAgGuuGGACGU---GGcGAGGGCGGCg -3'
miRNA:   3'- gCUgCu-UCUGCGaguUC-CUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 96588 0.66 0.961871
Target:  5'- gCGGCGcGAGGCGC-CGGGcGcGGGCGcGCc -3'
miRNA:   3'- -GCUGC-UUCUGCGaGUUC-CuCCUGC-CG- -5'
29385 5' -54.3 NC_006151.1 + 99563 0.66 0.961871
Target:  5'- gCGGCGcgcgcGGCGCUgcugcgCGAGGuGG-CGGCg -3'
miRNA:   3'- -GCUGCuu---CUGCGA------GUUCCuCCuGCCG- -5'
29385 5' -54.3 NC_006151.1 + 114680 0.66 0.961871
Target:  5'- -cGCGAAGGCcucguGCUCgAAGGgcgcguccccgGGGGCGGUu -3'
miRNA:   3'- gcUGCUUCUG-----CGAG-UUCC-----------UCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 127371 0.66 0.961871
Target:  5'- gGGCGggGAcCGCggggguggCGGGGGccGCGGCc -3'
miRNA:   3'- gCUGCuuCU-GCGa-------GUUCCUccUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 122697 0.66 0.961871
Target:  5'- cCGugGAGcucGCGCUCuucGGGcGGCGGCc -3'
miRNA:   3'- -GCugCUUc--UGCGAGuu-CCUcCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 28075 0.66 0.958655
Target:  5'- cCGACGucaccgucgucguccGGGCGUccUCGAGcGGGGcGCGGCu -3'
miRNA:   3'- -GCUGCu--------------UCUGCG--AGUUC-CUCC-UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 139639 0.66 0.958286
Target:  5'- cCGGCGccGGCGC----GGGGGucGCGGCg -3'
miRNA:   3'- -GCUGCuuCUGCGaguuCCUCC--UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 133283 0.66 0.958286
Target:  5'- cCGGCGgcGGCcCacgUCGAGGuucuccccgGGGGCGGCc -3'
miRNA:   3'- -GCUGCuuCUGcG---AGUUCC---------UCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 124053 0.66 0.958286
Target:  5'- aCGGCGAccuGGACGCgc-----GGACGGCc -3'
miRNA:   3'- -GCUGCU---UCUGCGaguuccuCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 104663 0.66 0.958286
Target:  5'- cCGACGcGGcgcgcGCGCUCGAcGAGGGgGuGCa -3'
miRNA:   3'- -GCUGCuUC-----UGCGAGUUcCUCCUgC-CG- -5'
29385 5' -54.3 NC_006151.1 + 71393 0.66 0.958286
Target:  5'- cCGACGGGcuguuUGCcugaGGGGAGGACGGg -3'
miRNA:   3'- -GCUGCUUcu---GCGag--UUCCUCCUGCCg -5'
29385 5' -54.3 NC_006151.1 + 59480 0.66 0.958286
Target:  5'- cCGGCG-AGGCGCccUCGAaGAGcccGGCGGCc -3'
miRNA:   3'- -GCUGCuUCUGCG--AGUUcCUC---CUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 8679 0.66 0.958286
Target:  5'- cCGACGGuGGugGC-C-GGGcGGGCGGUc -3'
miRNA:   3'- -GCUGCU-UCugCGaGuUCCuCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 29453 0.66 0.958286
Target:  5'- aGA-GggGACGCggAGGGAgcGGGCGcGCc -3'
miRNA:   3'- gCUgCuuCUGCGagUUCCU--CCUGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.