miRNA display CGI


Results 1 - 20 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29386 5' -63.8 NC_006151.1 + 87180 0.65 0.570134
Target:  5'- -cGCCCgCGGCGCCGccgcagcUGcuGCCGCccggGGCCGu -3'
miRNA:   3'- cuUGGG-GUCGCGGC-------AC--CGGUG----CCGGC- -5'
29386 5' -63.8 NC_006151.1 + 46698 0.66 0.561475
Target:  5'- gGggUCCUcugcgcagcauGGUGCCucgggGGCCGgGGCCGg -3'
miRNA:   3'- -CuuGGGG-----------UCGCGGca---CCGGUgCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 55055 0.66 0.561475
Target:  5'- aGAugCUCGGCGaggacCCGgcgggcucGGCCGCGGCgCGc -3'
miRNA:   3'- -CUugGGGUCGC-----GGCa-------CCGGUGCCG-GC- -5'
29386 5' -63.8 NC_006151.1 + 61161 0.66 0.561475
Target:  5'- aGGACaggaCCAGCGCgcucauaucaGUGGCCGCcagcGCCGc -3'
miRNA:   3'- -CUUGg---GGUCGCGg---------CACCGGUGc---CGGC- -5'
29386 5' -63.8 NC_006151.1 + 5634 0.66 0.561475
Target:  5'- -cGCCgCCgGGCGCCGagaccGGCCcgGCGGCgGg -3'
miRNA:   3'- cuUGG-GG-UCGCGGCa----CCGG--UGCCGgC- -5'
29386 5' -63.8 NC_006151.1 + 31212 0.66 0.561475
Target:  5'- -cGCgUCCAG-GCCG-GGCCccCGGCCGg -3'
miRNA:   3'- cuUG-GGGUCgCGGCaCCGGu-GCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 133237 0.66 0.561475
Target:  5'- -cGCgCCAGgGCaCGuUGGCCucgcACGGCCu -3'
miRNA:   3'- cuUGgGGUCgCG-GC-ACCGG----UGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 140192 0.66 0.561475
Target:  5'- uGGACCCCA---UCGUGGCCACcGCgGg -3'
miRNA:   3'- -CUUGGGGUcgcGGCACCGGUGcCGgC- -5'
29386 5' -63.8 NC_006151.1 + 27164 0.66 0.561475
Target:  5'- cGGCCCCgaGGCGCCGcgugucgGGgCGCcagggGGCCGc -3'
miRNA:   3'- cUUGGGG--UCGCGGCa------CCgGUG-----CCGGC- -5'
29386 5' -63.8 NC_006151.1 + 115119 0.66 0.561475
Target:  5'- -cGCCgCCGGCGacgcgcgCGUGcGCCuCGGCCa -3'
miRNA:   3'- cuUGG-GGUCGCg------GCAC-CGGuGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 140442 0.66 0.561475
Target:  5'- cGugCCCGGCGCCu--GCCuCGGCgGg -3'
miRNA:   3'- cUugGGGUCGCGGcacCGGuGCCGgC- -5'
29386 5' -63.8 NC_006151.1 + 28159 0.66 0.561475
Target:  5'- cGAuCCCCgucGGCGUCGUuggggcggcgaGuGCCGuCGGCCGg -3'
miRNA:   3'- -CUuGGGG---UCGCGGCA-----------C-CGGU-GCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 8235 0.66 0.560515
Target:  5'- --uUCCCGGCggggaggGCCG-GGCCGgCGcGCCGg -3'
miRNA:   3'- cuuGGGGUCG-------CGGCaCCGGU-GC-CGGC- -5'
29386 5' -63.8 NC_006151.1 + 133459 0.66 0.551897
Target:  5'- uGGCCCCGGUcgagGCCcgcgaggcGGCCGCGGgCGu -3'
miRNA:   3'- cUUGGGGUCG----CGGca------CCGGUGCCgGC- -5'
29386 5' -63.8 NC_006151.1 + 29968 0.66 0.551897
Target:  5'- cGGACCgCGGCGauGgugaaugGGcCCGCGGCCu -3'
miRNA:   3'- -CUUGGgGUCGCggCa------CC-GGUGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 57751 0.66 0.551897
Target:  5'- -cGCCgCAGcCGCuCGUGGCC-CGGgCa -3'
miRNA:   3'- cuUGGgGUC-GCG-GCACCGGuGCCgGc -5'
29386 5' -63.8 NC_006151.1 + 66444 0.66 0.551897
Target:  5'- -cGCCCCAcaGUGCCaccagacgGUGGUCccgGCGGUCGg -3'
miRNA:   3'- cuUGGGGU--CGCGG--------CACCGG---UGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 88465 0.66 0.551897
Target:  5'- -cGCCCgAGC-UCGUcGGCCACGGUg- -3'
miRNA:   3'- cuUGGGgUCGcGGCA-CCGGUGCCGgc -5'
29386 5' -63.8 NC_006151.1 + 98059 0.66 0.551897
Target:  5'- cAGCCCCgGGCGCUc-GGCCugGGgCu -3'
miRNA:   3'- cUUGGGG-UCGCGGcaCCGGugCCgGc -5'
29386 5' -63.8 NC_006151.1 + 40127 0.66 0.551897
Target:  5'- aGAUCgUCGGCGuCCGcggcGGCgACGGCCGg -3'
miRNA:   3'- cUUGG-GGUCGC-GGCa---CCGgUGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.