miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29387 3' -53.2 NC_006151.1 + 21276 0.65 0.966192
Target:  5'- ---aGCGCGCCcaucGCGGUgcccgugccgacgaUCACCgaGCGg -3'
miRNA:   3'- caaaCGCGCGGa---CGUCA--------------AGUGGa-UGC- -5'
29387 3' -53.2 NC_006151.1 + 92701 0.66 0.963833
Target:  5'- ---cGCGCGCCgagcGCgAGUUCAuCCaGCa -3'
miRNA:   3'- caaaCGCGCGGa---CG-UCAAGU-GGaUGc -5'
29387 3' -53.2 NC_006151.1 + 26977 0.66 0.963833
Target:  5'- ---aGCGCGCUgcgcaGCGGggCGCuCUGCu -3'
miRNA:   3'- caaaCGCGCGGa----CGUCaaGUG-GAUGc -5'
29387 3' -53.2 NC_006151.1 + 137878 0.66 0.963833
Target:  5'- ---gGCGCaGCCUGCGGcugcccuucUUCGCCaaggucgACGg -3'
miRNA:   3'- caaaCGCG-CGGACGUC---------AAGUGGa------UGC- -5'
29387 3' -53.2 NC_006151.1 + 100573 0.66 0.963487
Target:  5'- ---gGC-CGCCUGCAGgcCGCCaccguccUGCGg -3'
miRNA:   3'- caaaCGcGCGGACGUCaaGUGG-------AUGC- -5'
29387 3' -53.2 NC_006151.1 + 52963 0.66 0.960268
Target:  5'- ---gGUGCGCgUGCAGgcggcUCAUgUACGc -3'
miRNA:   3'- caaaCGCGCGgACGUCa----AGUGgAUGC- -5'
29387 3' -53.2 NC_006151.1 + 31776 0.66 0.960268
Target:  5'- ---cGCGCGCCggGCGGcucuccuccUUCACCgcCGc -3'
miRNA:   3'- caaaCGCGCGGa-CGUC---------AAGUGGauGC- -5'
29387 3' -53.2 NC_006151.1 + 96106 0.66 0.960268
Target:  5'- ---aGCGgGgUUGCGGgcacgaUCGCCUGCGu -3'
miRNA:   3'- caaaCGCgCgGACGUCa-----AGUGGAUGC- -5'
29387 3' -53.2 NC_006151.1 + 76891 0.66 0.960268
Target:  5'- ---aGCGcCGCCUGCug--CGCCgGCGa -3'
miRNA:   3'- caaaCGC-GCGGACGucaaGUGGaUGC- -5'
29387 3' -53.2 NC_006151.1 + 110201 0.66 0.956468
Target:  5'- ---cGCGcCGCCUGCGGgagaCGCggACGa -3'
miRNA:   3'- caaaCGC-GCGGACGUCaa--GUGgaUGC- -5'
29387 3' -53.2 NC_006151.1 + 64297 0.66 0.952427
Target:  5'- cGUUgucggGCGUGCC-GCAGcgCGCCgUGCu -3'
miRNA:   3'- -CAAa----CGCGCGGaCGUCaaGUGG-AUGc -5'
29387 3' -53.2 NC_006151.1 + 66095 0.66 0.952427
Target:  5'- ---cGCGgGCCUGCAGcgCGC--GCGc -3'
miRNA:   3'- caaaCGCgCGGACGUCaaGUGgaUGC- -5'
29387 3' -53.2 NC_006151.1 + 78237 0.66 0.948142
Target:  5'- ---gGCGCGCa-GCGGUUCGCgCUGu- -3'
miRNA:   3'- caaaCGCGCGgaCGUCAAGUG-GAUgc -5'
29387 3' -53.2 NC_006151.1 + 119545 0.66 0.948142
Target:  5'- --cUGCGCGCacacaaccCUGCAc--CGCCUGCGc -3'
miRNA:   3'- caaACGCGCG--------GACGUcaaGUGGAUGC- -5'
29387 3' -53.2 NC_006151.1 + 95914 0.67 0.938824
Target:  5'- --aUGcCGCGCgUGCAG-UCGCCcgaggGCGu -3'
miRNA:   3'- caaAC-GCGCGgACGUCaAGUGGa----UGC- -5'
29387 3' -53.2 NC_006151.1 + 55420 0.67 0.933786
Target:  5'- --cUGCGCGCCgcGCAGgcgggCGCggACGg -3'
miRNA:   3'- caaACGCGCGGa-CGUCaa---GUGgaUGC- -5'
29387 3' -53.2 NC_006151.1 + 62436 0.67 0.928495
Target:  5'- ---cGUGCGCCUGguccgCGCCUGCa -3'
miRNA:   3'- caaaCGCGCGGACgucaaGUGGAUGc -5'
29387 3' -53.2 NC_006151.1 + 20776 0.67 0.928495
Target:  5'- ---cGCGCGCCgggcgaGCGGcucgCGCUUGCGc -3'
miRNA:   3'- caaaCGCGCGGa-----CGUCaa--GUGGAUGC- -5'
29387 3' -53.2 NC_006151.1 + 85800 0.67 0.922948
Target:  5'- ---cGCGCGCgUGCAGcgcCACCaGCu -3'
miRNA:   3'- caaaCGCGCGgACGUCaa-GUGGaUGc -5'
29387 3' -53.2 NC_006151.1 + 81901 0.67 0.922948
Target:  5'- ---gGCGCGCCggucGCGGcgCGCCgccuCGg -3'
miRNA:   3'- caaaCGCGCGGa---CGUCaaGUGGau--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.