miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29387 5' -55.6 NC_006151.1 + 102856 0.66 0.930132
Target:  5'- cGGCGCgcagcgcuuccGCGUGGccaACGccGCGgugGC-GGGCCu -3'
miRNA:   3'- -CCGCG-----------UGCACU---UGC--UGUa--CGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 2811 0.66 0.930132
Target:  5'- cGGCGCAC-UGGGCGGCcgGgUccaGGCg -3'
miRNA:   3'- -CCGCGUGcACUUGCUGuaCgAc--CCGg -5'
29387 5' -55.6 NC_006151.1 + 46361 0.66 0.930132
Target:  5'- cGGCGCA-GUGGauGCGGCGgaUGCaGaGGCg -3'
miRNA:   3'- -CCGCGUgCACU--UGCUGU--ACGaC-CCGg -5'
29387 5' -55.6 NC_006151.1 + 66295 0.66 0.930132
Target:  5'- aGGCGCACGcGGcgcucccgGCGguccgaggcgaGCAUGUUcGGCCu -3'
miRNA:   3'- -CCGCGUGCaCU--------UGC-----------UGUACGAcCCGG- -5'
29387 5' -55.6 NC_006151.1 + 81860 0.66 0.930132
Target:  5'- aGGCGCGCGUcgcucuCGACGcGCaGGagcGCCg -3'
miRNA:   3'- -CCGCGUGCAcuu---GCUGUaCGaCC---CGG- -5'
29387 5' -55.6 NC_006151.1 + 27098 0.66 0.930132
Target:  5'- gGGCGCGCGUGucgccCGuCAcGUcgGcGGCCg -3'
miRNA:   3'- -CCGCGUGCACuu---GCuGUaCGa-C-CCGG- -5'
29387 5' -55.6 NC_006151.1 + 28813 0.66 0.930132
Target:  5'- gGGCGUcCGgGAcCGGCcaAUGC-GGGCCc -3'
miRNA:   3'- -CCGCGuGCaCUuGCUG--UACGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 89721 0.66 0.930132
Target:  5'- cGGCGC-CGgccGCGGCcgcgGUGgUGGGCg -3'
miRNA:   3'- -CCGCGuGCacuUGCUG----UACgACCCGg -5'
29387 5' -55.6 NC_006151.1 + 17093 0.66 0.926986
Target:  5'- aGGCGCGCGcccgucgGGgcgccgggggcuccgGCGGCGgUGCUGcgggaggcGGCCa -3'
miRNA:   3'- -CCGCGUGCa------CU---------------UGCUGU-ACGAC--------CCGG- -5'
29387 5' -55.6 NC_006151.1 + 59519 0.66 0.924841
Target:  5'- cGCGCGCGc-AGCGccGCGUGa-GGGCCc -3'
miRNA:   3'- cCGCGUGCacUUGC--UGUACgaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 87977 0.66 0.924841
Target:  5'- cGGCG-AUGacGACGAuCAUGCUgcucacgacGGGCCa -3'
miRNA:   3'- -CCGCgUGCacUUGCU-GUACGA---------CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 89433 0.66 0.924841
Target:  5'- uGGCGCACaUG-GCGACGgucacguacgccUGCaccagcaGGGCCc -3'
miRNA:   3'- -CCGCGUGcACuUGCUGU------------ACGa------CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 121662 0.66 0.924841
Target:  5'- gGGCGgGCGgaggggggGAGCGA---GC-GGGCCg -3'
miRNA:   3'- -CCGCgUGCa-------CUUGCUguaCGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 125169 0.66 0.924841
Target:  5'- cGCGCGCGagcucGAGCGccucggccucGCcgGCgucgUGGGCCc -3'
miRNA:   3'- cCGCGUGCa----CUUGC----------UGuaCG----ACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 5124 0.66 0.924841
Target:  5'- cGGCGCGgGcGAGUGGgGcGCcGGGCCg -3'
miRNA:   3'- -CCGCGUgCaCUUGCUgUaCGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 55880 0.66 0.924841
Target:  5'- cGGCGCuguCGcGGcgGACGUGCgccGGGCg -3'
miRNA:   3'- -CCGCGu--GCaCUugCUGUACGa--CCCGg -5'
29387 5' -55.6 NC_006151.1 + 124054 0.66 0.924299
Target:  5'- cGGCGaccuggaCGCGcGGACGGcCGUGCgcgcGGCCg -3'
miRNA:   3'- -CCGC-------GUGCaCUUGCU-GUACGac--CCGG- -5'
29387 5' -55.6 NC_006151.1 + 126035 0.66 0.924299
Target:  5'- cGGCG-ACGUGGGCGccgccgucgGCAaggugguccugggUGCcacggGGGCCg -3'
miRNA:   3'- -CCGCgUGCACUUGC---------UGU-------------ACGa----CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 54812 0.66 0.919311
Target:  5'- cGGCGCGUGcUGGcgcGCGACGcGCUcacGGGCg -3'
miRNA:   3'- -CCGCGUGC-ACU---UGCUGUaCGA---CCCGg -5'
29387 5' -55.6 NC_006151.1 + 122561 0.66 0.919311
Target:  5'- cGGCGCcuguacgcCGUGAGCGagcuGCAguuuugGCUGGcGUCc -3'
miRNA:   3'- -CCGCGu-------GCACUUGC----UGUa-----CGACC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.