miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29388 3' -55.6 NC_006151.1 + 79595 0.66 0.932617
Target:  5'- -cCGGGGaGCCGgagccCGGCGCCA-CaACCc -3'
miRNA:   3'- gaGCCUC-CGGUa----GCUGCGGUaGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 116851 0.66 0.932617
Target:  5'- uCUCGGcggcggggaAGGCCgcGUCGuCGCCGgcCUugCa -3'
miRNA:   3'- -GAGCC---------UCCGG--UAGCuGCGGUa-GAugG- -5'
29388 3' -55.6 NC_006151.1 + 93957 0.66 0.932617
Target:  5'- -aCGGAGGCgCAcucggCGACGCgcgaGUCgaGCCa -3'
miRNA:   3'- gaGCCUCCG-GUa----GCUGCGg---UAGa-UGG- -5'
29388 3' -55.6 NC_006151.1 + 53109 0.66 0.932617
Target:  5'- --gGGAGGCCGuacUCGAgCGCCuucaugagCUcGCCg -3'
miRNA:   3'- gagCCUCCGGU---AGCU-GCGGua------GA-UGG- -5'
29388 3' -55.6 NC_006151.1 + 44683 0.66 0.932617
Target:  5'- -aCGGcGGCCggCGGCugaccguaCCAUCUGCUg -3'
miRNA:   3'- gaGCCuCCGGuaGCUGc-------GGUAGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 5010 0.66 0.932617
Target:  5'- -gCGGGGGCCGggcgggcucCGGgGCCGgg-GCCg -3'
miRNA:   3'- gaGCCUCCGGUa--------GCUgCGGUagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 4877 0.66 0.927453
Target:  5'- -gCGGAcgcGGCCGUCGGCcggagggucggaGCCGg--GCCa -3'
miRNA:   3'- gaGCCU---CCGGUAGCUG------------CGGUagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 107473 0.66 0.927453
Target:  5'- -cUGGuGGCCAgcgCGcUGCCG-CUGCCc -3'
miRNA:   3'- gaGCCuCCGGUa--GCuGCGGUaGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 137608 0.66 0.927453
Target:  5'- aUCGGGGGCgCGggcggggacccCGGCGCC-UCcGCCc -3'
miRNA:   3'- gAGCCUCCG-GUa----------GCUGCGGuAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 109547 0.66 0.92424
Target:  5'- -cCGGAGgcGCCGUgGACGUgGcccgagccgagggacUCUGCCg -3'
miRNA:   3'- gaGCCUC--CGGUAgCUGCGgU---------------AGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 4283 0.66 0.916411
Target:  5'- -gCGGcAGGCCAg-GACGCaggCGUCcGCCa -3'
miRNA:   3'- gaGCC-UCCGGUagCUGCG---GUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 92124 0.66 0.916411
Target:  5'- uUCGGGaacGGCCGcaucgcgcgCGGCGCCAag-GCCa -3'
miRNA:   3'- gAGCCU---CCGGUa--------GCUGCGGUagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 141831 0.66 0.916411
Target:  5'- uUCGGGGGUCccgcgcUCGACGCgAggggCUcgcGCCg -3'
miRNA:   3'- gAGCCUCCGGu-----AGCUGCGgUa---GA---UGG- -5'
29388 3' -55.6 NC_006151.1 + 102229 0.66 0.916411
Target:  5'- --gGGAGGCgCcgUG-CGCCGUC-GCCg -3'
miRNA:   3'- gagCCUCCG-GuaGCuGCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 98581 0.66 0.910535
Target:  5'- cCUCGGccgaguucGGCCc-CGACGCCAUgUuCCg -3'
miRNA:   3'- -GAGCCu-------CCGGuaGCUGCGGUAgAuGG- -5'
29388 3' -55.6 NC_006151.1 + 63790 0.66 0.910535
Target:  5'- -gCGGGgucGGCCGUCGccaGCGCC-UC-GCCg -3'
miRNA:   3'- gaGCCU---CCGGUAGC---UGCGGuAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 19293 0.66 0.910535
Target:  5'- -cCGG-GGCCAgCGGCGCgGgcgGCCg -3'
miRNA:   3'- gaGCCuCCGGUaGCUGCGgUagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 55515 0.66 0.910535
Target:  5'- cCUCGGccacgAGGUCAUCGacaucacgcGCGCCAUggGCg -3'
miRNA:   3'- -GAGCC-----UCCGGUAGC---------UGCGGUAgaUGg -5'
29388 3' -55.6 NC_006151.1 + 132627 0.66 0.904423
Target:  5'- gCUCGcGuccGCCGUCGGCGCCcgg-ACCu -3'
miRNA:   3'- -GAGC-Cuc-CGGUAGCUGCGGuagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 129537 0.66 0.904423
Target:  5'- --gGGGGGCCcggGGcCGCCGUCaACCg -3'
miRNA:   3'- gagCCUCCGGuagCU-GCGGUAGaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.