miRNA display CGI


Results 1 - 20 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29388 5' -57.9 NC_006151.1 + 4499 0.65 0.828642
Target:  5'- gGCcACGGCGCucacCGCGUGCggcagGGCCcagagcggguccugGGCg -3'
miRNA:   3'- -UGuUGUCGUGc---GUGCACGa----CCGG--------------CCG- -5'
29388 5' -57.9 NC_006151.1 + 121406 0.65 0.827802
Target:  5'- gGCcuGCGGCGCGgGCGgggacgucgcgggGCUcGcGCCGGCc -3'
miRNA:   3'- -UGu-UGUCGUGCgUGCa------------CGA-C-CGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 81578 0.66 0.822726
Target:  5'- -gAGCAGggucuCGCGCGCGUcGCcggGGCCgccGGCg -3'
miRNA:   3'- ugUUGUC-----GUGCGUGCA-CGa--CCGG---CCG- -5'
29388 5' -57.9 NC_006151.1 + 17489 0.66 0.822726
Target:  5'- uCGGCGGCGCGC-CGcUGCUGcaCCaGCg -3'
miRNA:   3'- uGUUGUCGUGCGuGC-ACGACc-GGcCG- -5'
29388 5' -57.9 NC_006151.1 + 21749 0.66 0.822726
Target:  5'- ---cCAGCACGCgccgaacuuguACGUGCgGuGCUGGUc -3'
miRNA:   3'- uguuGUCGUGCG-----------UGCACGaC-CGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 88611 0.66 0.822726
Target:  5'- -gGGCGGCGCGCucagGCcgaacucgGGCUGGCu -3'
miRNA:   3'- ugUUGUCGUGCGugcaCGa-------CCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 88692 0.66 0.822726
Target:  5'- -gGACAGCACGCgccACGUGUagacgcccucGGUcuCGGCg -3'
miRNA:   3'- ugUUGUCGUGCG---UGCACGa---------CCG--GCCG- -5'
29388 5' -57.9 NC_006151.1 + 91739 0.66 0.822726
Target:  5'- gACAucGCGGCGgGCgaGCGgGCUcgGGCgGGCg -3'
miRNA:   3'- -UGU--UGUCGUgCG--UGCaCGA--CCGgCCG- -5'
29388 5' -57.9 NC_006151.1 + 96266 0.66 0.822726
Target:  5'- --cGCAGCGC-C-CGUGCUcgaGGCgGGCc -3'
miRNA:   3'- uguUGUCGUGcGuGCACGA---CCGgCCG- -5'
29388 5' -57.9 NC_006151.1 + 92212 0.66 0.822726
Target:  5'- cGCGGCcGCGCuggaGCACGaUGCUGcacgcGCCGcGCa -3'
miRNA:   3'- -UGUUGuCGUG----CGUGC-ACGAC-----CGGC-CG- -5'
29388 5' -57.9 NC_006151.1 + 118366 0.66 0.822726
Target:  5'- -aGGCGGCGCGCGCccGCUucgGGUucuCGGCc -3'
miRNA:   3'- ugUUGUCGUGCGUGcaCGA---CCG---GCCG- -5'
29388 5' -57.9 NC_006151.1 + 138254 0.66 0.822726
Target:  5'- cGCGACcGCGCaGCGgGUGgUGGCCa-- -3'
miRNA:   3'- -UGUUGuCGUG-CGUgCACgACCGGccg -5'
29388 5' -57.9 NC_006151.1 + 60887 0.66 0.817587
Target:  5'- cGCAGCAGC-CGCGCGagcaggGCguccacgcgGGCCagucgcgccauggugGGCg -3'
miRNA:   3'- -UGUUGUCGuGCGUGCa-----CGa--------CCGG---------------CCG- -5'
29388 5' -57.9 NC_006151.1 + 85948 0.66 0.814128
Target:  5'- uGCAGCAGC-CGCACcUGCgcaaCgCGGCg -3'
miRNA:   3'- -UGUUGUCGuGCGUGcACGacc-G-GCCG- -5'
29388 5' -57.9 NC_006151.1 + 2684 0.66 0.814128
Target:  5'- cGCAGCGGCucgGCcccgGgGUGCaGGCgGGCg -3'
miRNA:   3'- -UGUUGUCGug-CG----UgCACGaCCGgCCG- -5'
29388 5' -57.9 NC_006151.1 + 18517 0.66 0.814128
Target:  5'- nCGAgAGCAUGCGCGUccccGCccGcGUCGGCa -3'
miRNA:   3'- uGUUgUCGUGCGUGCA----CGa-C-CGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 51955 0.66 0.814128
Target:  5'- cGCAGCAcCACGCGCGgcguguccagcgagGCgagcagcuccgcgGuGCCGGCg -3'
miRNA:   3'- -UGUUGUcGUGCGUGCa-------------CGa------------C-CGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 130595 0.66 0.813259
Target:  5'- uGCAGCGGCaccaGCGCcucccagGCGUcCUGGUcgCGGCu -3'
miRNA:   3'- -UGUUGUCG----UGCG-------UGCAcGACCG--GCCG- -5'
29388 5' -57.9 NC_006151.1 + 69284 0.66 0.805365
Target:  5'- -uGGCGGCGCGCcaccagggacACGgGCc-GCCGGCg -3'
miRNA:   3'- ugUUGUCGUGCG----------UGCaCGacCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 61266 0.66 0.805365
Target:  5'- cGCGGCGGCAgGCGguauCGUGCggGGaCGGa -3'
miRNA:   3'- -UGUUGUCGUgCGU----GCACGa-CCgGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.