miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29389 3' -57.4 NC_006151.1 + 131864 0.66 0.88024
Target:  5'- cGCgcgCCggCgGCgUCGgGUCGCaGGGCa -3'
miRNA:   3'- cCGa--GGaaGgCGaAGUgCAGCG-CCCG- -5'
29389 3' -57.4 NC_006151.1 + 105760 0.66 0.88024
Target:  5'- cGGCgcgCCUgggcgaCCGCgacgucaucgCACGgugCGCGaGGCg -3'
miRNA:   3'- -CCGa--GGAa-----GGCGaa--------GUGCa--GCGC-CCG- -5'
29389 3' -57.4 NC_006151.1 + 115554 0.66 0.88024
Target:  5'- cGGCguaCUcgcCCGCgg-GCGggcgCGCGGGCa -3'
miRNA:   3'- -CCGag-GAa--GGCGaagUGCa---GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 11306 0.66 0.88024
Target:  5'- cGCUCUcccgggCCGC--CGCGauaccgCGCGGGCg -3'
miRNA:   3'- cCGAGGaa----GGCGaaGUGCa-----GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 64616 0.66 0.88024
Target:  5'- cGGCgCCgcgCCGCcggcCGCGgggCGCGGcGCc -3'
miRNA:   3'- -CCGaGGaa-GGCGaa--GUGCa--GCGCC-CG- -5'
29389 3' -57.4 NC_006151.1 + 84965 0.66 0.88024
Target:  5'- cGCUCCaggccaCGCU---CGUCGCGGaGCg -3'
miRNA:   3'- cCGAGGaag---GCGAaguGCAGCGCC-CG- -5'
29389 3' -57.4 NC_006151.1 + 102891 0.66 0.88024
Target:  5'- uGGCgggCCUgcgCCGCcUCGuCGacUCGCuGGCg -3'
miRNA:   3'- -CCGa--GGAa--GGCGaAGU-GC--AGCGcCCG- -5'
29389 3' -57.4 NC_006151.1 + 110815 0.66 0.88024
Target:  5'- gGGCagaaggUCCGCUUCAgGccgacCGUGGGCc -3'
miRNA:   3'- -CCGagga--AGGCGAAGUgCa----GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 67697 0.66 0.876028
Target:  5'- aGCUCCcgcuugUCCGCcuggcgccacaggCACGgCGCGGcGCa -3'
miRNA:   3'- cCGAGGa-----AGGCGaa-----------GUGCaGCGCC-CG- -5'
29389 3' -57.4 NC_006151.1 + 105114 0.66 0.874607
Target:  5'- cGGCUCaucaucgacacgcacCCGCUgacgacgCGCGUCgacggccGCGGGCc -3'
miRNA:   3'- -CCGAGgaa------------GGCGAa------GUGCAG-------CGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 21359 0.66 0.873178
Target:  5'- cGGCUCCgcgggCUGCggcCACc-CGCuGGGCa -3'
miRNA:   3'- -CCGAGGaa---GGCGaa-GUGcaGCG-CCCG- -5'
29389 3' -57.4 NC_006151.1 + 72065 0.66 0.873178
Target:  5'- cGGCgcgcgCCaccacCCGCgccgUCAgcUCGCGGGCc -3'
miRNA:   3'- -CCGa----GGaa---GGCGa---AGUgcAGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 103726 0.66 0.873178
Target:  5'- gGGCuUCCUggagCCGCUggCGCGgcagUGCGaGGa -3'
miRNA:   3'- -CCG-AGGAa---GGCGAa-GUGCa---GCGC-CCg -5'
29389 3' -57.4 NC_006151.1 + 20753 0.66 0.873178
Target:  5'- cGGCgcgCCUccaCCGCggcggaCGCG-CGCcGGGCg -3'
miRNA:   3'- -CCGa--GGAa--GGCGaa----GUGCaGCG-CCCG- -5'
29389 3' -57.4 NC_006151.1 + 66718 0.66 0.873178
Target:  5'- cGCUUCgucaaCCGCUUCGCGcuccugUCGCGGn- -3'
miRNA:   3'- cCGAGGaa---GGCGAAGUGC------AGCGCCcg -5'
29389 3' -57.4 NC_006151.1 + 113429 0.66 0.873178
Target:  5'- uGGCgCUgcgCCGCUUC-CGgCGCGGcGUg -3'
miRNA:   3'- -CCGaGGaa-GGCGAAGuGCaGCGCC-CG- -5'
29389 3' -57.4 NC_006151.1 + 39883 0.66 0.873178
Target:  5'- gGGCcugCCggCCGaguugcgcgcCUUCuGCGcCGCGGGCu -3'
miRNA:   3'- -CCGa--GGaaGGC----------GAAG-UGCaGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 28856 0.66 0.87246
Target:  5'- cGGCUCCcccaUUgGCcggCGCGUCcccggagGCGGGUg -3'
miRNA:   3'- -CCGAGGa---AGgCGaa-GUGCAG-------CGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 127812 0.66 0.865906
Target:  5'- gGGCgcgaggUCCUUgCGgUUCACGUaCGUGGcgGCg -3'
miRNA:   3'- -CCG------AGGAAgGCgAAGUGCA-GCGCC--CG- -5'
29389 3' -57.4 NC_006151.1 + 98391 0.66 0.865906
Target:  5'- cGCcuggCCUgCCGCgccUACGUCGagaCGGGCa -3'
miRNA:   3'- cCGa---GGAaGGCGaa-GUGCAGC---GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.