miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29389 5' -56.5 NC_006151.1 + 131900 0.66 0.89372
Target:  5'- cCGagGGCGACGgggGCgGCAGCaGGGCc -3'
miRNA:   3'- aGCagUCGCUGCag-UG-CGUCGaCCUG- -5'
29389 5' -56.5 NC_006151.1 + 131101 0.66 0.89372
Target:  5'- aCGUCGGCGGgGggcccggC-CGCGGCgcgGGAg -3'
miRNA:   3'- aGCAGUCGCUgCa------GuGCGUCGa--CCUg -5'
29389 5' -56.5 NC_006151.1 + 57979 0.66 0.89372
Target:  5'- -gGUgGGCGGCGagCGCGCcGC-GGACc -3'
miRNA:   3'- agCAgUCGCUGCa-GUGCGuCGaCCUG- -5'
29389 5' -56.5 NC_006151.1 + 116936 0.66 0.893055
Target:  5'- cUCGUCgcgggccagguugAGgGGCGUgcaguugaccucCACGUcGCUGGACg -3'
miRNA:   3'- -AGCAG-------------UCgCUGCA------------GUGCGuCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 66950 0.66 0.886974
Target:  5'- -aGgCGGCGGCGggCGCgGCAcGCUGGAg -3'
miRNA:   3'- agCaGUCGCUGCa-GUG-CGU-CGACCUg -5'
29389 5' -56.5 NC_006151.1 + 76791 0.66 0.886974
Target:  5'- -aGUCGGCGcCGUacaGCGCcccGGCgaGGGCg -3'
miRNA:   3'- agCAGUCGCuGCAg--UGCG---UCGa-CCUG- -5'
29389 5' -56.5 NC_006151.1 + 95767 0.66 0.886974
Target:  5'- cUCGUCGGCGGCGagCAUGCcgcgcauguucAGCacGGCg -3'
miRNA:   3'- -AGCAGUCGCUGCa-GUGCG-----------UCGacCUG- -5'
29389 5' -56.5 NC_006151.1 + 107082 0.66 0.886974
Target:  5'- cUCG-CAGCuGGCGgugUCGCGCGuGCucUGGGCg -3'
miRNA:   3'- -AGCaGUCG-CUGC---AGUGCGU-CG--ACCUG- -5'
29389 5' -56.5 NC_006151.1 + 111991 0.66 0.886974
Target:  5'- gCGgugCGGCuacGACGUCgACGCGGCgGcGGCg -3'
miRNA:   3'- aGCa--GUCG---CUGCAG-UGCGUCGaC-CUG- -5'
29389 5' -56.5 NC_006151.1 + 115833 0.66 0.886974
Target:  5'- -gGcCAGCca-GUCGCGCAGCaGGAUc -3'
miRNA:   3'- agCaGUCGcugCAGUGCGUCGaCCUG- -5'
29389 5' -56.5 NC_006151.1 + 54642 0.66 0.880003
Target:  5'- -aG-CGGCGGCGcgaGCGCuGCgUGGACg -3'
miRNA:   3'- agCaGUCGCUGCag-UGCGuCG-ACCUG- -5'
29389 5' -56.5 NC_006151.1 + 68766 0.66 0.880003
Target:  5'- cCGgCGGUGGCG-CGCGCGGCgaGGuGCg -3'
miRNA:   3'- aGCaGUCGCUGCaGUGCGUCGa-CC-UG- -5'
29389 5' -56.5 NC_006151.1 + 78708 0.66 0.878582
Target:  5'- cUCGUCGccGCGACGgcgcccguggggCGCGC-GCUGcGGCc -3'
miRNA:   3'- -AGCAGU--CGCUGCa-----------GUGCGuCGAC-CUG- -5'
29389 5' -56.5 NC_006151.1 + 64542 0.66 0.878582
Target:  5'- gCGUCGGgGGCGgcgaggccguggCGCGCcAGCUcGACg -3'
miRNA:   3'- aGCAGUCgCUGCa-----------GUGCG-UCGAcCUG- -5'
29389 5' -56.5 NC_006151.1 + 117547 0.66 0.872811
Target:  5'- aCG-CGGCGACG-CGcCGCGGCcagaaGGGCu -3'
miRNA:   3'- aGCaGUCGCUGCaGU-GCGUCGa----CCUG- -5'
29389 5' -56.5 NC_006151.1 + 102908 0.66 0.872811
Target:  5'- cUCGUCgacucgcuGGCGgccgccgaggaGCGgcugCGCGC-GCUGGACg -3'
miRNA:   3'- -AGCAG--------UCGC-----------UGCa---GUGCGuCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 132141 0.66 0.87208
Target:  5'- gCGcCGGCggugguuGACGgCGCGCAGCUGcGCg -3'
miRNA:   3'- aGCaGUCG-------CUGCaGUGCGUCGACcUG- -5'
29389 5' -56.5 NC_006151.1 + 25079 0.66 0.868392
Target:  5'- cUCGUCGGggauucCGGCGUCGgccauuguugcugcgUGCGagcGCUGGGCg -3'
miRNA:   3'- -AGCAGUC------GCUGCAGU---------------GCGU---CGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 67597 0.66 0.864651
Target:  5'- cUCGgaGGCGACGUCGacgaucuUGCGGCgggGGAg -3'
miRNA:   3'- -AGCagUCGCUGCAGU-------GCGUCGa--CCUg -5'
29389 5' -56.5 NC_006151.1 + 89489 0.66 0.860857
Target:  5'- gCGgCGGCGAgccgguacgcgcgggUGUgGCGCAGC-GGACg -3'
miRNA:   3'- aGCaGUCGCU---------------GCAgUGCGUCGaCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.