miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29389 5' -56.5 NC_006151.1 + 122987 0.68 0.785505
Target:  5'- gCGUCGGCGACGaagacgggcccggCGCGCccccgccGGC-GGACg -3'
miRNA:   3'- aGCAGUCGCUGCa------------GUGCG-------UCGaCCUG- -5'
29389 5' -56.5 NC_006151.1 + 122447 0.67 0.841943
Target:  5'- gCGgaGGCGGCGUcCACgGCGGCggcGGGCg -3'
miRNA:   3'- aGCagUCGCUGCA-GUG-CGUCGa--CCUG- -5'
29389 5' -56.5 NC_006151.1 + 122295 0.7 0.656671
Target:  5'- gCGUguGCGACcaccUCACGCGGCagcuggcggugcgcgUGGACc -3'
miRNA:   3'- aGCAguCGCUGc---AGUGCGUCG---------------ACCUG- -5'
29389 5' -56.5 NC_006151.1 + 117698 0.69 0.742882
Target:  5'- cUCGcUCAgGCG-CGUCACGUAGCUGc-- -3'
miRNA:   3'- -AGC-AGU-CGCuGCAGUGCGUCGACcug -5'
29389 5' -56.5 NC_006151.1 + 117547 0.66 0.872811
Target:  5'- aCG-CGGCGACG-CGcCGCGGCcagaaGGGCu -3'
miRNA:   3'- aGCaGUCGCUGCaGU-GCGUCGa----CCUG- -5'
29389 5' -56.5 NC_006151.1 + 116936 0.66 0.893055
Target:  5'- cUCGUCgcgggccagguugAGgGGCGUgcaguugaccucCACGUcGCUGGACg -3'
miRNA:   3'- -AGCAG-------------UCgCUGCA------------GUGCGuCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 116103 0.75 0.41844
Target:  5'- cUCGUCGGCGAUG--GCGCGGCgcuugucGGGCa -3'
miRNA:   3'- -AGCAGUCGCUGCagUGCGUCGa------CCUG- -5'
29389 5' -56.5 NC_006151.1 + 115833 0.66 0.886974
Target:  5'- -gGcCAGCca-GUCGCGCAGCaGGAUc -3'
miRNA:   3'- agCaGUCGcugCAGUGCGUCGaCCUG- -5'
29389 5' -56.5 NC_006151.1 + 115160 0.69 0.742882
Target:  5'- cCGaaGGCGGCGaagcCGCGCGGCaggGGGCg -3'
miRNA:   3'- aGCagUCGCUGCa---GUGCGUCGa--CCUG- -5'
29389 5' -56.5 NC_006151.1 + 114413 0.67 0.825338
Target:  5'- -aGUCGGUGcACGUgCAccacCGCGuGCUGGACc -3'
miRNA:   3'- agCAGUCGC-UGCA-GU----GCGU-CGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 112608 0.67 0.816768
Target:  5'- cCG-CGGCGcCG-CugGC-GCUGGACg -3'
miRNA:   3'- aGCaGUCGCuGCaGugCGuCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 111991 0.66 0.886974
Target:  5'- gCGgugCGGCuacGACGUCgACGCGGCgGcGGCg -3'
miRNA:   3'- aGCa--GUCG---CUGCAG-UGCGUCGaC-CUG- -5'
29389 5' -56.5 NC_006151.1 + 107082 0.66 0.886974
Target:  5'- cUCG-CAGCuGGCGgugUCGCGCGuGCucUGGGCg -3'
miRNA:   3'- -AGCaGUCG-CUGC---AGUGCGU-CG--ACCUG- -5'
29389 5' -56.5 NC_006151.1 + 106163 0.67 0.84917
Target:  5'- uUCGg-GGCGcuggaccGCGUCGCGCAcccgccGCUGGAg -3'
miRNA:   3'- -AGCagUCGC-------UGCAGUGCGU------CGACCUg -5'
29389 5' -56.5 NC_006151.1 + 105048 0.69 0.713325
Target:  5'- cUGcUCGGCGcCGUCgaggagGCGCccgAGCUGGACg -3'
miRNA:   3'- aGC-AGUCGCuGCAG------UGCG---UCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 104908 0.66 0.857785
Target:  5'- aCG-CGGCGGCGgCGCGCGaccGCgacgGGGCc -3'
miRNA:   3'- aGCaGUCGCUGCaGUGCGU---CGa---CCUG- -5'
29389 5' -56.5 NC_006151.1 + 104401 0.67 0.84917
Target:  5'- aUCGcCGGCGGCGUgCugGCccgcgccgccgccGGCaugGGGCg -3'
miRNA:   3'- -AGCaGUCGCUGCA-GugCG-------------UCGa--CCUG- -5'
29389 5' -56.5 NC_006151.1 + 103968 0.68 0.799132
Target:  5'- gCGcCAGCG-CGUCG-GCgAGCUGGAg -3'
miRNA:   3'- aGCaGUCGCuGCAGUgCG-UCGACCUg -5'
29389 5' -56.5 NC_006151.1 + 103846 0.67 0.849963
Target:  5'- cUCGggCGGCuGCG-CGCGCAGCccgacgaggGGACg -3'
miRNA:   3'- -AGCa-GUCGcUGCaGUGCGUCGa--------CCUG- -5'
29389 5' -56.5 NC_006151.1 + 103813 0.68 0.771567
Target:  5'- cUGUCGGCGGcCGUgGCGgCGGCcgUGGAg -3'
miRNA:   3'- aGCAGUCGCU-GCAgUGC-GUCG--ACCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.