miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2939 5' -55.9 NC_001493.1 + 116872 0.7 0.714066
Target:  5'- aGCGuCuCCGCGGAagcgGGCACCGcGGUGa -3'
miRNA:   3'- -UGCuGuGGCGCUUg---CUGUGGCaCCAC- -5'
2939 5' -55.9 NC_001493.1 + 109796 0.67 0.880175
Target:  5'- uCGAacCCGUGAauACGAUACCG-GGUGc -3'
miRNA:   3'- uGCUguGGCGCU--UGCUGUGGCaCCAC- -5'
2939 5' -55.9 NC_001493.1 + 107009 0.72 0.592313
Target:  5'- cACGGCGCCGUGAAuacCGAgGCgGUGuGUGu -3'
miRNA:   3'- -UGCUGUGGCGCUU---GCUgUGgCAC-CAC- -5'
2939 5' -55.9 NC_001493.1 + 100957 0.72 0.612672
Target:  5'- uUGuCGCCG-GAACGACACUGUGuGUGc -3'
miRNA:   3'- uGCuGUGGCgCUUGCUGUGGCAC-CAC- -5'
2939 5' -55.9 NC_001493.1 + 95418 0.67 0.842247
Target:  5'- -gGACcCCGCGAGauACAUCGUGGa- -3'
miRNA:   3'- ugCUGuGGCGCUUgcUGUGGCACCac -5'
2939 5' -55.9 NC_001493.1 + 90559 0.67 0.842247
Target:  5'- cACGACGgCGCuagaGGAUGACACCGUcGUc -3'
miRNA:   3'- -UGCUGUgGCG----CUUGCUGUGGCAcCAc -5'
2939 5' -55.9 NC_001493.1 + 90459 0.66 0.887123
Target:  5'- cAUGAC-CC-CGAGCG-CACCGUccauGGUGg -3'
miRNA:   3'- -UGCUGuGGcGCUUGCuGUGGCA----CCAC- -5'
2939 5' -55.9 NC_001493.1 + 81645 0.67 0.873008
Target:  5'- uGCGuAUAUgGCGGGCGAUcaACCG-GGUGc -3'
miRNA:   3'- -UGC-UGUGgCGCUUGCUG--UGGCaCCAC- -5'
2939 5' -55.9 NC_001493.1 + 69685 0.67 0.850239
Target:  5'- cACGA-GCCGUuugaucggGGugGGCGCgGUGGUGg -3'
miRNA:   3'- -UGCUgUGGCG--------CUugCUGUGgCACCAC- -5'
2939 5' -55.9 NC_001493.1 + 67992 0.69 0.756993
Target:  5'- gAUGAUGCCcaguaacuccucggcGuCGAGCGAUGCCGUGGUc -3'
miRNA:   3'- -UGCUGUGG---------------C-GCUUGCUGUGGCACCAc -5'
2939 5' -55.9 NC_001493.1 + 67820 0.69 0.772117
Target:  5'- cACGGCAUCGCu--CGACGCCGaGGa- -3'
miRNA:   3'- -UGCUGUGGCGcuuGCUGUGGCaCCac -5'
2939 5' -55.9 NC_001493.1 + 65889 0.67 0.873008
Target:  5'- -aGAUACCGCcucauaaGACaACGCCGUGGUu -3'
miRNA:   3'- ugCUGUGGCGc------UUGcUGUGGCACCAc -5'
2939 5' -55.9 NC_001493.1 + 64958 0.68 0.799587
Target:  5'- aACGGCugCGaCGAgcGCGAUaACCGgGGUGc -3'
miRNA:   3'- -UGCUGugGC-GCU--UGCUG-UGGCaCCAC- -5'
2939 5' -55.9 NC_001493.1 + 64074 0.76 0.385621
Target:  5'- aACGACACCGCGAauaucaccacgGCGACGCCcgcgGGa- -3'
miRNA:   3'- -UGCUGUGGCGCU-----------UGCUGUGGca--CCac -5'
2939 5' -55.9 NC_001493.1 + 64032 0.76 0.385621
Target:  5'- aACGACACCGCGAauaucaccacgGCGACGCCcgcgGGa- -3'
miRNA:   3'- -UGCUGUGGCGCU-----------UGCUGUGGca--CCac -5'
2939 5' -55.9 NC_001493.1 + 63990 0.67 0.873008
Target:  5'- aACGACACCGCGAAUauCACCa----- -3'
miRNA:   3'- -UGCUGUGGCGCUUGcuGUGGcaccac -5'
2939 5' -55.9 NC_001493.1 + 63967 0.82 0.177067
Target:  5'- gGCGACGcCCGCGGgagccaACGACACCGcGGUGa -3'
miRNA:   3'- -UGCUGU-GGCGCU------UGCUGUGGCaCCAC- -5'
2939 5' -55.9 NC_001493.1 + 63939 0.67 0.842247
Target:  5'- uUGGCucCCGCGGGCGuCGCCGgugUGGUc -3'
miRNA:   3'- uGCUGu-GGCGCUUGCuGUGGC---ACCAc -5'
2939 5' -55.9 NC_001493.1 + 63922 0.82 0.177067
Target:  5'- gGCGACGcCCGCGGgagccaACGACACCGcGGUGa -3'
miRNA:   3'- -UGCUGU-GGCGCU------UGCUGUGGCaCCAC- -5'
2939 5' -55.9 NC_001493.1 + 63897 0.82 0.172664
Target:  5'- uUGGCucCCGCGGGCGuCGCCGUGGUGa -3'
miRNA:   3'- uGCUGu-GGCGCUUGCuGUGGCACCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.