miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29390 3' -60.7 NC_006151.1 + 104565 0.66 0.709768
Target:  5'- cCUGgGCGCgCGGcGCGCggacgugcugcaggCCGGCGGc -3'
miRNA:   3'- cGAUgCGCGgGCC-CGCGaa------------GGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 88042 0.66 0.708793
Target:  5'- cGCUGCGUGUCCucgaagacGGGCaGCUgcgagGGCAGg -3'
miRNA:   3'- -CGAUGCGCGGG--------CCCG-CGAagg--UCGUC- -5'
29390 3' -60.7 NC_006151.1 + 61249 0.66 0.708793
Target:  5'- aGC-GCGCGCCaCGaGGaCGCgg-CGGCAGg -3'
miRNA:   3'- -CGaUGCGCGG-GC-CC-GCGaagGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 58145 0.66 0.708793
Target:  5'- -gUACGCGgCCGcGUGCcaCCGGCGGu -3'
miRNA:   3'- cgAUGCGCgGGCcCGCGaaGGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 83580 0.66 0.707817
Target:  5'- --cGCGgGCCCGaagagcgggaccaGGCGCgugUgCAGCAGc -3'
miRNA:   3'- cgaUGCgCGGGC-------------CCGCGa--AgGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 75196 0.66 0.70293
Target:  5'- cGCUGCaugagcccgacgaggGCGUCgGGGCGCgcgucggCCAcGUAGg -3'
miRNA:   3'- -CGAUG---------------CGCGGgCCCGCGaa-----GGU-CGUC- -5'
29390 3' -60.7 NC_006151.1 + 28087 0.66 0.699011
Target:  5'- ---uCGuCGUCCGGGCGUccUCgAGCGGg -3'
miRNA:   3'- cgauGC-GCGGGCCCGCGa-AGgUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 54616 0.66 0.699011
Target:  5'- ----gGUGCgCCGGGCGCgccCCGGgGGg -3'
miRNA:   3'- cgaugCGCG-GGCCCGCGaa-GGUCgUC- -5'
29390 3' -60.7 NC_006151.1 + 45562 0.66 0.699011
Target:  5'- --gGCGCGCCCGGGCcaucgUCCcgGGaCGGc -3'
miRNA:   3'- cgaUGCGCGGGCCCGcga--AGG--UC-GUC- -5'
29390 3' -60.7 NC_006151.1 + 57502 0.66 0.699011
Target:  5'- cGC-ACGCGCUCGGcCGCgg-CGGCGGc -3'
miRNA:   3'- -CGaUGCGCGGGCCcGCGaagGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 81979 0.66 0.699011
Target:  5'- -gUACG-GCCCGGGCuGCaccaCGGCGGc -3'
miRNA:   3'- cgAUGCgCGGGCCCG-CGaag-GUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 121339 0.66 0.699011
Target:  5'- aGCUgguGCGCGaCCucgagggccagaCGGGCGCggaCGGCGGc -3'
miRNA:   3'- -CGA---UGCGC-GG------------GCCCGCGaagGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 127517 0.66 0.699011
Target:  5'- cGC-AUGCuCCCGuGGCGCg-UCAGCGGg -3'
miRNA:   3'- -CGaUGCGcGGGC-CCGCGaaGGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 131734 0.66 0.699011
Target:  5'- gGCggggugGCGgGCCCGGGCGaggcgaCCGucGCGGu -3'
miRNA:   3'- -CGa-----UGCgCGGGCCCGCgaa---GGU--CGUC- -5'
29390 3' -60.7 NC_006151.1 + 76833 0.66 0.697048
Target:  5'- gGCggccCGCGUCCGGGCGaCguacaggaaggCCAGCc- -3'
miRNA:   3'- -CGau--GCGCGGGCCCGC-Gaa---------GGUCGuc -5'
29390 3' -60.7 NC_006151.1 + 89083 0.66 0.696065
Target:  5'- --cGCGCGUCCgguuguuguuccgcGGGgGCUUCCuGCGc -3'
miRNA:   3'- cgaUGCGCGGG--------------CCCgCGAAGGuCGUc -5'
29390 3' -60.7 NC_006151.1 + 102113 0.66 0.693115
Target:  5'- cGCgUGCGCGggccggagccuguucCCCGGGCGCgcCgGGCu- -3'
miRNA:   3'- -CG-AUGCGC---------------GGGCCCGCGaaGgUCGuc -5'
29390 3' -60.7 NC_006151.1 + 130509 0.66 0.689175
Target:  5'- cGCcGCGCGUCuCGGGCGCg---GGCGu -3'
miRNA:   3'- -CGaUGCGCGG-GCCCGCGaaggUCGUc -5'
29390 3' -60.7 NC_006151.1 + 115126 0.66 0.689175
Target:  5'- gGCgACGCGCgCGuGCGCcucggCCAGCAc -3'
miRNA:   3'- -CGaUGCGCGgGCcCGCGaa---GGUCGUc -5'
29390 3' -60.7 NC_006151.1 + 98042 0.66 0.689175
Target:  5'- cGCaGCGCGagcaccaccagcCCCGGGCGCUcggCCuGgGGc -3'
miRNA:   3'- -CGaUGCGC------------GGGCCCGCGAa--GGuCgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.