miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29390 3' -60.7 NC_006151.1 + 129737 0.68 0.579739
Target:  5'- --cGCGgGCCCGcgaGGCGCUgcagcaCCAGCGc -3'
miRNA:   3'- cgaUGCgCGGGC---CCGCGAa-----GGUCGUc -5'
29390 3' -60.7 NC_006151.1 + 128033 0.68 0.56004
Target:  5'- uCUGCGaCGCCCGcGGCaGCgg-CGGCAGc -3'
miRNA:   3'- cGAUGC-GCGGGC-CCG-CGaagGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 127800 0.7 0.47434
Target:  5'- cGCcGCGCGCggGGGCGCgaggUCCuuGCGGu -3'
miRNA:   3'- -CGaUGCGCGggCCCGCGa---AGGu-CGUC- -5'
29390 3' -60.7 NC_006151.1 + 127517 0.66 0.699011
Target:  5'- cGC-AUGCuCCCGuGGCGCg-UCAGCGGg -3'
miRNA:   3'- -CGaUGCGcGGGC-CCGCGaaGGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 124927 0.66 0.658435
Target:  5'- cGCUucacgucGCGgGCCCuGGGCGCcUCCuucgucAGCGa -3'
miRNA:   3'- -CGA-------UGCgCGGG-CCCGCGaAGG------UCGUc -5'
29390 3' -60.7 NC_006151.1 + 124709 1.1 0.000787
Target:  5'- gGCUACGCGCCCGGGCGCUUCCAGCAGg -3'
miRNA:   3'- -CGAUGCGCGGGCCCGCGAAGGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 123001 0.74 0.278376
Target:  5'- --gACGgGCCCGGcGCGCccccgCCGGCGGa -3'
miRNA:   3'- cgaUGCgCGGGCC-CGCGaa---GGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 122791 0.66 0.688189
Target:  5'- gGCUGCGCggccucGCCCGacgagcgccucgaGGCGCUcaUCCGcGCGu -3'
miRNA:   3'- -CGAUGCG------CGGGC-------------CCGCGA--AGGU-CGUc -5'
29390 3' -60.7 NC_006151.1 + 122386 0.78 0.152539
Target:  5'- --gGCGCGCCgCGGGCGCgcgCUGGCGGc -3'
miRNA:   3'- cgaUGCGCGG-GCCCGCGaa-GGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 121339 0.66 0.699011
Target:  5'- aGCUgguGCGCGaCCucgagggccagaCGGGCGCggaCGGCGGc -3'
miRNA:   3'- -CGA---UGCGC-GG------------GCCCGCGaagGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 121189 0.71 0.404031
Target:  5'- uGCUgcACGCGCUCgGGGCGCgcaCgCAGCAc -3'
miRNA:   3'- -CGA--UGCGCGGG-CCCGCGaa-G-GUCGUc -5'
29390 3' -60.7 NC_006151.1 + 119967 0.66 0.689175
Target:  5'- cGCgcUGUGCCCGGcGacgaGCUUCCuggcGCGGc -3'
miRNA:   3'- -CGauGCGCGGGCC-Cg---CGAAGGu---CGUC- -5'
29390 3' -60.7 NC_006151.1 + 119825 0.71 0.404031
Target:  5'- cGCUGCGCGCUCu-GCGCgacacggUCgAGCAGg -3'
miRNA:   3'- -CGAUGCGCGGGccCGCGa------AGgUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 119071 0.67 0.608543
Target:  5'- cGCggGCGCGCCCGucucgcaggccgcGGCGCU--CGGCGc -3'
miRNA:   3'- -CGa-UGCGCGGGC-------------CCGCGAagGUCGUc -5'
29390 3' -60.7 NC_006151.1 + 117389 0.71 0.387506
Target:  5'- gGCcACGCGCuuGccgcaGGCGCUgagccCCAGCAGc -3'
miRNA:   3'- -CGaUGCGCGggC-----CCGCGAa----GGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 117251 0.68 0.579739
Target:  5'- --gGCGgGCCCGaGGCGCgggCCGcgcGCGGc -3'
miRNA:   3'- cgaUGCgCGGGC-CCGCGaa-GGU---CGUC- -5'
29390 3' -60.7 NC_006151.1 + 117015 0.67 0.639484
Target:  5'- cGCUcccccGCGgGCCCGGGCcgcagGCgguaCCAGCc- -3'
miRNA:   3'- -CGA-----UGCgCGGGCCCG-----CGaa--GGUCGuc -5'
29390 3' -60.7 NC_006151.1 + 115173 0.69 0.502253
Target:  5'- aGCcGCGCGgCaggGGGCGCUccagCCAGCGc -3'
miRNA:   3'- -CGaUGCGCgGg--CCCGCGAa---GGUCGUc -5'
29390 3' -60.7 NC_006151.1 + 115126 0.66 0.689175
Target:  5'- gGCgACGCGCgCGuGCGCcucggCCAGCAc -3'
miRNA:   3'- -CGaUGCGCGgGCcCGCGaa---GGUCGUc -5'
29390 3' -60.7 NC_006151.1 + 114893 0.71 0.395713
Target:  5'- aGCUucccggGCGCgagGCCCGGGCGCacggccCCGGCGu -3'
miRNA:   3'- -CGA------UGCG---CGGGCCCGCGaa----GGUCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.