miRNA display CGI


Results 1 - 20 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 119566 0.66 0.889931
Target:  5'- cCGCCUGCGCCAccgcucccgcgcuUCGGCgcGCCGaCGg -3'
miRNA:   3'- uGUGGAUGUGGUucu----------AGCCG--CGGC-GC- -5'
29391 3' -56.6 NC_006151.1 + 60459 0.66 0.889254
Target:  5'- aGCACCaGCACgGAGggCGugaaGCGCgCGCa -3'
miRNA:   3'- -UGUGGaUGUGgUUCuaGC----CGCG-GCGc -5'
29391 3' -56.6 NC_006151.1 + 81943 0.66 0.889254
Target:  5'- -gGCC-ACGCCGAGG-CGcacCGCCGCGc -3'
miRNA:   3'- ugUGGaUGUGGUUCUaGCc--GCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 87231 0.66 0.889254
Target:  5'- cGCACCcGCACCAcgcAGccggGGCGCUGUa -3'
miRNA:   3'- -UGUGGaUGUGGU---UCuag-CCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 21319 0.66 0.889254
Target:  5'- gGCGCgagACGCCcGGcgCGGCGgggguCCGCGg -3'
miRNA:   3'- -UGUGga-UGUGGuUCuaGCCGC-----GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 29409 0.66 0.889254
Target:  5'- -gACC-GCGCgGAGAaggcUCGGUgugGCCGCGg -3'
miRNA:   3'- ugUGGaUGUGgUUCU----AGCCG---CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 40080 0.66 0.889254
Target:  5'- -gGCCUcggGCGCCGGGGcCGGCcCCgGCGa -3'
miRNA:   3'- ugUGGA---UGUGGUUCUaGCCGcGG-CGC- -5'
29391 3' -56.6 NC_006151.1 + 56655 0.66 0.889254
Target:  5'- -gGCCgugUACCGcugguGGAcgaCGGCGCCGCGc -3'
miRNA:   3'- ugUGGau-GUGGU-----UCUa--GCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 66398 0.66 0.889254
Target:  5'- aGCGCgaCUGCGCCGAGGa-GGC-CCGCu -3'
miRNA:   3'- -UGUG--GAUGUGGUUCUagCCGcGGCGc -5'
29391 3' -56.6 NC_006151.1 + 84339 0.66 0.889254
Target:  5'- -gGCCU-CGCCGAGuacgucgcCGGC-CCGCGg -3'
miRNA:   3'- ugUGGAuGUGGUUCua------GCCGcGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 118356 0.66 0.889254
Target:  5'- cGCGCCUGCG---AGG-CGGCGCgCGCc -3'
miRNA:   3'- -UGUGGAUGUgguUCUaGCCGCG-GCGc -5'
29391 3' -56.6 NC_006151.1 + 129681 0.66 0.889254
Target:  5'- cGCACCguccggcCGCCGuGGAccgCGGCGCCGa- -3'
miRNA:   3'- -UGUGGau-----GUGGU-UCUa--GCCGCGGCgc -5'
29391 3' -56.6 NC_006151.1 + 130500 0.66 0.889254
Target:  5'- gGCGCCacACGCCGcgcgucucgGGcgCgGGCGUCGCGu -3'
miRNA:   3'- -UGUGGa-UGUGGU---------UCuaG-CCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 64224 0.66 0.889254
Target:  5'- gGCGCCUcggcguacaGgGCCGcGA-CGGCGgCGCGg -3'
miRNA:   3'- -UGUGGA---------UgUGGUuCUaGCCGCgGCGC- -5'
29391 3' -56.6 NC_006151.1 + 128518 0.66 0.888576
Target:  5'- aGCACCUcgcccgagcccgAgGCCAcggcgggcccgccGGcgCGGUGCCGCc -3'
miRNA:   3'- -UGUGGA------------UgUGGU-------------UCuaGCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 101546 0.66 0.888576
Target:  5'- cGCGCCUGCGCCcgg--CGGacguguacgcgcaCGUCGCGg -3'
miRNA:   3'- -UGUGGAUGUGGuucuaGCC-------------GCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 96577 0.66 0.883067
Target:  5'- aGCGCCgccucgcggcgcgagGCGCCGGGcgCGggcGCGCCGaCGu -3'
miRNA:   3'- -UGUGGa--------------UGUGGUUCuaGC---CGCGGC-GC- -5'
29391 3' -56.6 NC_006151.1 + 36615 0.66 0.882368
Target:  5'- cCGCCgccGgGCCGGucUCGGCGCCcgGCGg -3'
miRNA:   3'- uGUGGa--UgUGGUUcuAGCCGCGG--CGC- -5'
29391 3' -56.6 NC_006151.1 + 137575 0.66 0.882368
Target:  5'- uACACgUGCGacgacgaCGAGGUCGGgGUCGgGa -3'
miRNA:   3'- -UGUGgAUGUg------GUUCUAGCCgCGGCgC- -5'
29391 3' -56.6 NC_006151.1 + 118088 0.66 0.882368
Target:  5'- gACGCCg--AUCGAGGcgCuGCGCCGCGa -3'
miRNA:   3'- -UGUGGaugUGGUUCUa-GcCGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.