miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29392 3' -60.7 NC_006151.1 + 75680 0.66 0.705237
Target:  5'- aGCGCGCCacgUCGUCCauguugcugacGGCCUugCCCAuCAc -3'
miRNA:   3'- -CGUGCGGa--AGCGGG-----------UCGGG--GGGUuGU- -5'
29392 3' -60.7 NC_006151.1 + 69886 0.66 0.705237
Target:  5'- cGCGCGCCcaCGCgCAGCgCCgCCGuCGu -3'
miRNA:   3'- -CGUGCGGaaGCGgGUCG-GGgGGUuGU- -5'
29392 3' -60.7 NC_006151.1 + 104096 0.66 0.705237
Target:  5'- aGCACGCCUUCGaCgCGGCCgaguucgugcgCCUgcgCGACGu -3'
miRNA:   3'- -CGUGCGGAAGC-GgGUCGG-----------GGG---GUUGU- -5'
29392 3' -60.7 NC_006151.1 + 86786 0.66 0.705237
Target:  5'- gGCGgGgCUUCuGCCUaaaagcggGGCCuCCCCGGCGc -3'
miRNA:   3'- -CGUgCgGAAG-CGGG--------UCGG-GGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 72020 0.66 0.705237
Target:  5'- cCACGUCggCGCCCcgcgcgGGCgCCCCGccgcGCAg -3'
miRNA:   3'- cGUGCGGaaGCGGG------UCGgGGGGU----UGU- -5'
29392 3' -60.7 NC_006151.1 + 61523 0.66 0.705237
Target:  5'- -uGCGggUUCGCCCuGGCCgCCCUGACGc -3'
miRNA:   3'- cgUGCggAAGCGGG-UCGG-GGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 87123 0.66 0.705237
Target:  5'- aGCGCGagaucagccaCCUgcgCGCCCAGCagcuccgcuaCCCGACGc -3'
miRNA:   3'- -CGUGC----------GGAa--GCGGGUCGgg--------GGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 14398 0.66 0.704258
Target:  5'- cGCGCGUCcgUCGCCUaggugagucggggGGCUUCCCGgguGCGg -3'
miRNA:   3'- -CGUGCGGa-AGCGGG-------------UCGGGGGGU---UGU- -5'
29392 3' -60.7 NC_006151.1 + 107861 0.66 0.704258
Target:  5'- -gGCGCCcgagacgGCCCccccggaGGCCCCCCAGg- -3'
miRNA:   3'- cgUGCGGaag----CGGG-------UCGGGGGGUUgu -5'
29392 3' -60.7 NC_006151.1 + 106375 0.66 0.695421
Target:  5'- cGCGCGCC--CGCCgCGGCgCCCgCuGCGc -3'
miRNA:   3'- -CGUGCGGaaGCGG-GUCG-GGGgGuUGU- -5'
29392 3' -60.7 NC_006151.1 + 751 0.66 0.695421
Target:  5'- cGCgGCGCC--CGCCCcauuGGCUCCCCucGCGc -3'
miRNA:   3'- -CG-UGCGGaaGCGGG----UCGGGGGGu-UGU- -5'
29392 3' -60.7 NC_006151.1 + 39848 0.66 0.695421
Target:  5'- gGC-CGCCggggccUCGCCgAGCUCCgCGGCc -3'
miRNA:   3'- -CGuGCGGa-----AGCGGgUCGGGGgGUUGu -5'
29392 3' -60.7 NC_006151.1 + 69100 0.66 0.695421
Target:  5'- gGCGUGCCgcCGCaCCAGCUCCCgCcGCGc -3'
miRNA:   3'- -CGUGCGGaaGCG-GGUCGGGGG-GuUGU- -5'
29392 3' -60.7 NC_006151.1 + 69653 0.66 0.695421
Target:  5'- gGCGcCGCCgggUCGUCgaAGCCCCCgcGCGu -3'
miRNA:   3'- -CGU-GCGGa--AGCGGg-UCGGGGGguUGU- -5'
29392 3' -60.7 NC_006151.1 + 84911 0.66 0.695421
Target:  5'- uGUACGCCg-CGCgCGGCgccgCCUCCGGCGu -3'
miRNA:   3'- -CGUGCGGaaGCGgGUCG----GGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 136077 0.66 0.695421
Target:  5'- aCGCGCCggagCGCCCGcuGCgCUCCAucGCGg -3'
miRNA:   3'- cGUGCGGaa--GCGGGU--CGgGGGGU--UGU- -5'
29392 3' -60.7 NC_006151.1 + 23127 0.66 0.695421
Target:  5'- cCGCGCCccuccuccgUCGCCgGG-CCCUCGGCGg -3'
miRNA:   3'- cGUGCGGa--------AGCGGgUCgGGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 26365 0.66 0.695421
Target:  5'- cCGCGUCggggCGCgC-GUCCCCCGGCGg -3'
miRNA:   3'- cGUGCGGaa--GCGgGuCGGGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 138640 0.66 0.695421
Target:  5'- cGCGCcggacugggagGCCUUcaaCGCCaCGGCcaucuacguggCCCCCAACGa -3'
miRNA:   3'- -CGUG-----------CGGAA---GCGG-GUCG-----------GGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 25430 0.66 0.694436
Target:  5'- cGCGCGCCcgucaUcccuccccgcggcCGCCC-GCCCCCCccuGGCGc -3'
miRNA:   3'- -CGUGCGGa----A-------------GCGGGuCGGGGGG---UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.