miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29392 5' -55.3 NC_006151.1 + 9489 0.66 0.914925
Target:  5'- cGCggccGCGGcgugGGAGAGCG-GGGCg- -3'
miRNA:   3'- aUGaaa-CGCCa---CCUCUUGCaCCCGga -5'
29392 5' -55.3 NC_006151.1 + 73048 0.66 0.908848
Target:  5'- -----cGCGGUGGGGGugcGCG-GGGUCc -3'
miRNA:   3'- augaaaCGCCACCUCU---UGCaCCCGGa -5'
29392 5' -55.3 NC_006151.1 + 44813 0.66 0.908848
Target:  5'- gUGCUaugGgGGUGcGAGGGCGUcGGGaCCg -3'
miRNA:   3'- -AUGAaa-CgCCAC-CUCUUGCA-CCC-GGa -5'
29392 5' -55.3 NC_006151.1 + 33092 0.66 0.908848
Target:  5'- gGCgg-GCGGUGGAGGGgGgagaggaaggucUGGGCg- -3'
miRNA:   3'- aUGaaaCGCCACCUCUUgC------------ACCCGga -5'
29392 5' -55.3 NC_006151.1 + 112057 0.66 0.908848
Target:  5'- gGCg--GCGGcGGuGGugGUGGGgCUg -3'
miRNA:   3'- aUGaaaCGCCaCCuCUugCACCCgGA- -5'
29392 5' -55.3 NC_006151.1 + 84041 0.66 0.902526
Target:  5'- gUGCguggUGCGGcUGG-GggUG-GGGCCg -3'
miRNA:   3'- -AUGaa--ACGCC-ACCuCuuGCaCCCGGa -5'
29392 5' -55.3 NC_006151.1 + 42996 0.66 0.902526
Target:  5'- ----aUGCGGgGGAGGGCGgcGGGCgCUu -3'
miRNA:   3'- augaaACGCCaCCUCUUGCa-CCCG-GA- -5'
29392 5' -55.3 NC_006151.1 + 11808 0.66 0.902526
Target:  5'- gGCggggUGgGGUGGGGGGCGgcgGcGGCUc -3'
miRNA:   3'- aUGaa--ACgCCACCUCUUGCa--C-CCGGa -5'
29392 5' -55.3 NC_006151.1 + 45392 0.66 0.89596
Target:  5'- gACgaUGaUGGUGGuGGugGUGGuGCCg -3'
miRNA:   3'- aUGaaAC-GCCACCuCUugCACC-CGGa -5'
29392 5' -55.3 NC_006151.1 + 98821 0.66 0.89596
Target:  5'- gGCguugGCGGUGcGccagaugcAGAACGaGGGCCUg -3'
miRNA:   3'- aUGaaa-CGCCAC-C--------UCUUGCaCCCGGA- -5'
29392 5' -55.3 NC_006151.1 + 106344 0.66 0.89596
Target:  5'- cGCUggacGCGGUGGAcacgcuGGACGcGGGCg- -3'
miRNA:   3'- aUGAaa--CGCCACCU------CUUGCaCCCGga -5'
29392 5' -55.3 NC_006151.1 + 143296 0.66 0.889155
Target:  5'- cGCU---CGGgGGAGAGC-UGGGCCUc -3'
miRNA:   3'- aUGAaacGCCaCCUCUUGcACCCGGA- -5'
29392 5' -55.3 NC_006151.1 + 102195 0.66 0.882114
Target:  5'- gACUUUcUGGUGGAGAACG-GcGCCc -3'
miRNA:   3'- aUGAAAcGCCACCUCUUGCaCcCGGa -5'
29392 5' -55.3 NC_006151.1 + 75405 0.66 0.882114
Target:  5'- gUGCgugcGCGGguccgGGAGGcccgGCGUGGGCg- -3'
miRNA:   3'- -AUGaaa-CGCCa----CCUCU----UGCACCCGga -5'
29392 5' -55.3 NC_006151.1 + 133355 0.67 0.874842
Target:  5'- gGCg--GCGGUGGuGGugGUGGuggugguggcgGCCg -3'
miRNA:   3'- aUGaaaCGCCACCuCUugCACC-----------CGGa -5'
29392 5' -55.3 NC_006151.1 + 30692 0.67 0.874842
Target:  5'- -----gGCGGgcgGGGGggUGUcgGGGCCg -3'
miRNA:   3'- augaaaCGCCa--CCUCuuGCA--CCCGGa -5'
29392 5' -55.3 NC_006151.1 + 84702 0.67 0.867343
Target:  5'- cGCUggagcgGCaGGUGGAGcGCGU-GGCCg -3'
miRNA:   3'- aUGAaa----CG-CCACCUCuUGCAcCCGGa -5'
29392 5' -55.3 NC_006151.1 + 15635 0.67 0.859624
Target:  5'- gACUUUGaCGG-GGccAGCGUGGGCg- -3'
miRNA:   3'- aUGAAAC-GCCaCCucUUGCACCCGga -5'
29392 5' -55.3 NC_006151.1 + 44512 0.67 0.851691
Target:  5'- -----gGCGGUGGGGAaGCGcGGGCg- -3'
miRNA:   3'- augaaaCGCCACCUCU-UGCaCCCGga -5'
29392 5' -55.3 NC_006151.1 + 26291 0.67 0.851691
Target:  5'- gACggUGgGGUGGGGGGgGUGGGg-- -3'
miRNA:   3'- aUGaaACgCCACCUCUUgCACCCgga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.