miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29393 3' -55.7 NC_006151.1 + 111312 0.66 0.918478
Target:  5'- -cGCGGCgGCCGCGUGcCCGgGCaCGg -3'
miRNA:   3'- gaUGCUGgUGGUGUACaGGUgCGgGU- -5'
29393 3' -55.7 NC_006151.1 + 82991 0.66 0.918478
Target:  5'- uCUGCG-CCGCCACGg--CCGCGgCgCAg -3'
miRNA:   3'- -GAUGCuGGUGGUGUacaGGUGCgG-GU- -5'
29393 3' -55.7 NC_006151.1 + 92712 0.66 0.918478
Target:  5'- -cGCGAguucauCCAgCACGUGguggCCAUGCUCAc -3'
miRNA:   3'- gaUGCU------GGUgGUGUACa---GGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 87027 0.66 0.918478
Target:  5'- -aGCG-CCGCUACGacgaCUACGCCCAg -3'
miRNA:   3'- gaUGCuGGUGGUGUaca-GGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 136021 0.66 0.918478
Target:  5'- -cGCGGCCcugACCAUG-GUCCucgagcagguGCGCCCGc -3'
miRNA:   3'- gaUGCUGG---UGGUGUaCAGG----------UGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 17038 0.66 0.917906
Target:  5'- -gGCGACgAUCACGUccagggcGUCgGCGUCCGu -3'
miRNA:   3'- gaUGCUGgUGGUGUA-------CAGgUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 136675 0.66 0.917331
Target:  5'- -cGCGGCCGCCGCcuucuuccgCCACGUgCGg -3'
miRNA:   3'- gaUGCUGGUGGUGuaca-----GGUGCGgGU- -5'
29393 3' -55.7 NC_006151.1 + 70479 0.66 0.912645
Target:  5'- uCUGCGACgAgCACAUGcgCCGCGUg-- -3'
miRNA:   3'- -GAUGCUGgUgGUGUACa-GGUGCGggu -5'
29393 3' -55.7 NC_006151.1 + 17252 0.66 0.912645
Target:  5'- -gAgGACCACUcCGUGUCCA-GCCgCGg -3'
miRNA:   3'- gaUgCUGGUGGuGUACAGGUgCGG-GU- -5'
29393 3' -55.7 NC_006151.1 + 38252 0.66 0.912645
Target:  5'- -cGCGGCCcucuucgccccgGCCaACGUGgCCGCGgCCCGg -3'
miRNA:   3'- gaUGCUGG------------UGG-UGUACaGGUGC-GGGU- -5'
29393 3' -55.7 NC_006151.1 + 43017 0.66 0.912645
Target:  5'- gCUugGcACCccuCCACAUcUCCucgaucGCGCCCAg -3'
miRNA:   3'- -GAugC-UGGu--GGUGUAcAGG------UGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 57744 0.66 0.912645
Target:  5'- -cACGGCgCGCCGCAg--CCGCucgugGCCCGg -3'
miRNA:   3'- gaUGCUG-GUGGUGUacaGGUG-----CGGGU- -5'
29393 3' -55.7 NC_006151.1 + 88696 0.66 0.912645
Target:  5'- -aGC-ACgCGCCACGUGUagACGCCCu -3'
miRNA:   3'- gaUGcUG-GUGGUGUACAggUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 103444 0.66 0.912645
Target:  5'- -cGCG-CaCAUCACGg--CCACGCCCGu -3'
miRNA:   3'- gaUGCuG-GUGGUGUacaGGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 74880 0.66 0.912645
Target:  5'- -cGCGGCCACCGuggccggggcCAgccgaugccgGUCCACGCUgAg -3'
miRNA:   3'- gaUGCUGGUGGU----------GUa---------CAGGUGCGGgU- -5'
29393 3' -55.7 NC_006151.1 + 117633 0.66 0.912645
Target:  5'- -aGCGugC-CCACGUGcacgCCGCGCUg- -3'
miRNA:   3'- gaUGCugGuGGUGUACa---GGUGCGGgu -5'
29393 3' -55.7 NC_006151.1 + 137424 0.66 0.912645
Target:  5'- -cGCcGCCGCCGCGggGUCCGCcUCCGc -3'
miRNA:   3'- gaUGcUGGUGGUGUa-CAGGUGcGGGU- -5'
29393 3' -55.7 NC_006151.1 + 69100 0.66 0.91145
Target:  5'- -gGCGuGCCGCCGCAccagcucccgCCGCGCCUc -3'
miRNA:   3'- gaUGC-UGGUGGUGUaca-------GGUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 6999 0.66 0.906573
Target:  5'- -cGCGuCUACUuuGCAUGUCCG-GCCCc -3'
miRNA:   3'- gaUGCuGGUGG--UGUACAGGUgCGGGu -5'
29393 3' -55.7 NC_006151.1 + 6918 0.66 0.906573
Target:  5'- -cGCGuCUACUuuGCAUGUCCG-GCCCc -3'
miRNA:   3'- gaUGCuGGUGG--UGUACAGGUgCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.