miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29393 5' -62.8 NC_006151.1 + 14250 0.66 0.644015
Target:  5'- uGCgggGGAuccCCCGGuCgGGGUgGGCCGgGa -3'
miRNA:   3'- -CGa--CCU---GGGCCuGgCCCGgUUGGCgC- -5'
29393 5' -62.8 NC_006151.1 + 130274 0.66 0.644015
Target:  5'- cGC-GGcCCCGaGGCCGcgggcgcgcgccGGCCGACgGCGc -3'
miRNA:   3'- -CGaCCuGGGC-CUGGC------------CCGGUUGgCGC- -5'
29393 5' -62.8 NC_006151.1 + 100699 0.66 0.644015
Target:  5'- cGC-GaGACCUGGACCGaGGCgCGcgaggagcaggcGCCGCc -3'
miRNA:   3'- -CGaC-CUGGGCCUGGC-CCG-GU------------UGGCGc -5'
29393 5' -62.8 NC_006151.1 + 4903 0.66 0.644015
Target:  5'- --cGGAgCCGGGCCaGGGCUccCCgaGCGg -3'
miRNA:   3'- cgaCCUgGGCCUGG-CCCGGuuGG--CGC- -5'
29393 5' -62.8 NC_006151.1 + 139605 0.66 0.644015
Target:  5'- aGCgGcGGCCCGu-CCGGGCgCGGCUGgGg -3'
miRNA:   3'- -CGaC-CUGGGCcuGGCCCG-GUUGGCgC- -5'
29393 5' -62.8 NC_006151.1 + 99072 0.66 0.644015
Target:  5'- aGCUGcGCCCGGgcACCGuGGCgCGgcGCCuGCGc -3'
miRNA:   3'- -CGACcUGGGCC--UGGC-CCG-GU--UGG-CGC- -5'
29393 5' -62.8 NC_006151.1 + 20380 0.66 0.644015
Target:  5'- cGCguccagGGuCCCGGGCaccgGGGUCAucGCCGUc -3'
miRNA:   3'- -CGa-----CCuGGGCCUGg---CCCGGU--UGGCGc -5'
29393 5' -62.8 NC_006151.1 + 141874 0.66 0.638186
Target:  5'- uCUGGugCCGGaggGCCGGGCaucgagcuccaccucCAcgcgccCCGCGg -3'
miRNA:   3'- cGACCugGGCC---UGGCCCG---------------GUu-----GGCGC- -5'
29393 5' -62.8 NC_006151.1 + 106320 0.66 0.634299
Target:  5'- cGCUGGACgcggugCUGGACCGcGcGCUGGaCGCGg -3'
miRNA:   3'- -CGACCUG------GGCCUGGC-C-CGGUUgGCGC- -5'
29393 5' -62.8 NC_006151.1 + 126301 0.66 0.634299
Target:  5'- aGCUGGACCaGGcCCGGGaCAugauCCGg- -3'
miRNA:   3'- -CGACCUGGgCCuGGCCCgGUu---GGCgc -5'
29393 5' -62.8 NC_006151.1 + 650 0.66 0.634299
Target:  5'- gGCUuccgGGGCgcggCCGGGgCGGGCU--CCGCGg -3'
miRNA:   3'- -CGA----CCUG----GGCCUgGCCCGGuuGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 58656 0.66 0.634299
Target:  5'- gGgaGGGCgCGGcGCaGGGCCGccaugACCGCGc -3'
miRNA:   3'- -CgaCCUGgGCC-UGgCCCGGU-----UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 27604 0.66 0.634299
Target:  5'- cGCc-GACCCGGaACCGGacccgagcCCGGCCGCc -3'
miRNA:   3'- -CGacCUGGGCC-UGGCCc-------GGUUGGCGc -5'
29393 5' -62.8 NC_006151.1 + 69739 0.66 0.634299
Target:  5'- -gUGGcccCCCGcGGCCgcgaccgccgGGGCCAcgcGCCGCGc -3'
miRNA:   3'- cgACCu--GGGC-CUGG----------CCCGGU---UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 51181 0.66 0.628468
Target:  5'- uGCaGGGCCCGcuccacgacgaggguGGCCagcaGGCCGcCCGCGg -3'
miRNA:   3'- -CGaCCUGGGC---------------CUGGc---CCGGUuGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 79197 0.66 0.625553
Target:  5'- aGCUGGucaugagaggggauuCCCGGucGCUcGGCCccAGCCGCGc -3'
miRNA:   3'- -CGACCu--------------GGGCC--UGGcCCGG--UUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 74880 0.66 0.624581
Target:  5'- cGC-GGcCaCCGuGGCCgGGGCCAGCCGa- -3'
miRNA:   3'- -CGaCCuG-GGC-CUGG-CCCGGUUGGCgc -5'
29393 5' -62.8 NC_006151.1 + 37134 0.66 0.624581
Target:  5'- --cGGcgccccacucGCCCGcGCCGGGCCGccACCGUc -3'
miRNA:   3'- cgaCC----------UGGGCcUGGCCCGGU--UGGCGc -5'
29393 5' -62.8 NC_006151.1 + 109740 0.66 0.624581
Target:  5'- cGCUGGAgC-GGauGCCGuGGCC-GCCGCc -3'
miRNA:   3'- -CGACCUgGgCC--UGGC-CCGGuUGGCGc -5'
29393 5' -62.8 NC_006151.1 + 106775 0.66 0.624581
Target:  5'- cGCgUGaGcGCCUGGACCuGGCCGcgGCgGCGg -3'
miRNA:   3'- -CG-AC-C-UGGGCCUGGcCCGGU--UGgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.