miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29394 3' -56.2 NC_006151.1 + 114927 0.66 0.885717
Target:  5'- cGGCGUCGcgcucGGCCUcCggggUGGGCGCGa -3'
miRNA:   3'- -CUGCGGCu----CCGGAuGaa--ACUCGCGUg -5'
29394 3' -56.2 NC_006151.1 + 109749 0.66 0.885717
Target:  5'- gGAUGCCGuGGCCgccGCcgUUGgaGGCGCccGCa -3'
miRNA:   3'- -CUGCGGCuCCGGa--UGa-AAC--UCGCG--UG- -5'
29394 3' -56.2 NC_006151.1 + 39850 0.66 0.885717
Target:  5'- -cCGCCGGGGCCU-CgccGAGCucCGCg -3'
miRNA:   3'- cuGCGGCUCCGGAuGaaaCUCGc-GUG- -5'
29394 3' -56.2 NC_006151.1 + 5366 0.66 0.885717
Target:  5'- cGGCGCCGgcgGGGCUgucuCUgcGGGgGCGCc -3'
miRNA:   3'- -CUGCGGC---UCCGGau--GAaaCUCgCGUG- -5'
29394 3' -56.2 NC_006151.1 + 114240 0.66 0.885717
Target:  5'- gGugGCCGcgcGGGaCCc-CUcgGAGCGCGCc -3'
miRNA:   3'- -CugCGGC---UCC-GGauGAaaCUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 129958 0.66 0.885717
Target:  5'- cGACGCC--GGCacGCgc-GAGCGCACg -3'
miRNA:   3'- -CUGCGGcuCCGgaUGaaaCUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 40086 0.66 0.878609
Target:  5'- gGGCGCCGGGGCCgGCccc-GGCGaggACg -3'
miRNA:   3'- -CUGCGGCUCCGGaUGaaacUCGCg--UG- -5'
29394 3' -56.2 NC_006151.1 + 64769 0.66 0.878609
Target:  5'- uGCGCgGGGGCUgguUGCcg-GGGCGCGa -3'
miRNA:   3'- cUGCGgCUCCGG---AUGaaaCUCGCGUg -5'
29394 3' -56.2 NC_006151.1 + 77957 0.66 0.878609
Target:  5'- cACGCUGAGcgugcgcccgcGCCggUACgccGAGCGCGCg -3'
miRNA:   3'- cUGCGGCUC-----------CGG--AUGaaaCUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 89276 0.66 0.878609
Target:  5'- cGGCGCCGcggcgauGGCCgccGCguaGAGCGCcaGCa -3'
miRNA:   3'- -CUGCGGCu------CCGGa--UGaaaCUCGCG--UG- -5'
29394 3' -56.2 NC_006151.1 + 137350 0.66 0.878609
Target:  5'- ---cCCGAGGCCgacgGCgacUGGGcCGCGCa -3'
miRNA:   3'- cugcGGCUCCGGa---UGaa-ACUC-GCGUG- -5'
29394 3' -56.2 NC_006151.1 + 114448 0.66 0.877885
Target:  5'- -cUGCuCGGGGCCUGCgccGGccaccgcaucgucGCGCACg -3'
miRNA:   3'- cuGCG-GCUCCGGAUGaaaCU-------------CGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 131051 0.66 0.871274
Target:  5'- cGGgGCCgGAGGCCgucuccaugccGCggaGGGCGCGCg -3'
miRNA:   3'- -CUgCGG-CUCCGGa----------UGaaaCUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 103189 0.66 0.871274
Target:  5'- gGACGCCGcccuggcGGCCgccccggACgagGAGaCGCGCg -3'
miRNA:   3'- -CUGCGGCu------CCGGa------UGaaaCUC-GCGUG- -5'
29394 3' -56.2 NC_006151.1 + 66383 0.66 0.871274
Target:  5'- aGCG-CGAGGCCag---UGAGCGCGa -3'
miRNA:   3'- cUGCgGCUCCGGaugaaACUCGCGUg -5'
29394 3' -56.2 NC_006151.1 + 64111 0.66 0.871274
Target:  5'- aGAgGUCGuGGCCcgGCggUG-GCGCGCc -3'
miRNA:   3'- -CUgCGGCuCCGGa-UGaaACuCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 138161 0.66 0.863719
Target:  5'- cGCGCuCGAGGCCUucg-UG-GCGgACg -3'
miRNA:   3'- cUGCG-GCUCCGGAugaaACuCGCgUG- -5'
29394 3' -56.2 NC_006151.1 + 104610 0.66 0.863719
Target:  5'- cGGCGCCGAGaUCUGCc----GCGCGCu -3'
miRNA:   3'- -CUGCGGCUCcGGAUGaaacuCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 103048 0.66 0.863719
Target:  5'- cGCGCUGcuGGCCgagGCgca-GGCGCACg -3'
miRNA:   3'- cUGCGGCu-CCGGa--UGaaacUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 96612 0.66 0.863719
Target:  5'- cGCGCCGAcGUCgUGCccgaGGGCGCGCa -3'
miRNA:   3'- cUGCGGCUcCGG-AUGaaa-CUCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.