miRNA display CGI


Results 1 - 20 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29394 5' -59.4 NC_006151.1 + 81371 0.66 0.795038
Target:  5'- gGCGggcGCCaGCgcgagCCGCGC-CGCGgCGCc -3'
miRNA:   3'- -CGCa--CGG-CGaa---GGUGCGcGCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 60225 0.66 0.795038
Target:  5'- cGCGcGCCGgagccgUCCACGUacacgaagaGCuCGUCGCg -3'
miRNA:   3'- -CGCaCGGCga----AGGUGCG---------CGcGCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 117381 0.66 0.795038
Target:  5'- aCGUGCaCGg--CCACGCGCuuGcCGCa -3'
miRNA:   3'- cGCACG-GCgaaGGUGCGCGcgCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 103761 0.66 0.795038
Target:  5'- aGCGcGCCGCgg-CGCuGCGCGaGUCGg -3'
miRNA:   3'- -CGCaCGGCGaagGUG-CGCGCgCAGCg -5'
29394 5' -59.4 NC_006151.1 + 97352 0.66 0.795038
Target:  5'- cGCGgggaagGCCGCggcggCgGCGgGCGCGgCGg -3'
miRNA:   3'- -CGCa-----CGGCGaa---GgUGCgCGCGCaGCg -5'
29394 5' -59.4 NC_006151.1 + 101979 0.66 0.795038
Target:  5'- gGCGggcgGCCGUcgcgcaagUUCCGCcCGCGCaccCGCg -3'
miRNA:   3'- -CGCa---CGGCG--------AAGGUGcGCGCGca-GCG- -5'
29394 5' -59.4 NC_006151.1 + 99650 0.66 0.795038
Target:  5'- aCGUgGCuCGcCUUCCGCGCGCagaGcCGCu -3'
miRNA:   3'- cGCA-CG-GC-GAAGGUGCGCGcg-CaGCG- -5'
29394 5' -59.4 NC_006151.1 + 141630 0.66 0.795038
Target:  5'- gGCGgGUCGCUgCCGCGgCGgCGCGgcggggcccCGCg -3'
miRNA:   3'- -CGCaCGGCGAaGGUGC-GC-GCGCa--------GCG- -5'
29394 5' -59.4 NC_006151.1 + 141742 0.66 0.79416
Target:  5'- gGCGgaggGgCGCggggCGCGCGCcccggugGCGUCGCc -3'
miRNA:   3'- -CGCa---CgGCGaag-GUGCGCG-------CGCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 50628 0.66 0.79328
Target:  5'- aGCGUGCaCGCcucggcgacggCCGCGgGCGgacccgaGUCGUg -3'
miRNA:   3'- -CGCACG-GCGaa---------GGUGCgCGCg------CAGCG- -5'
29394 5' -59.4 NC_006151.1 + 127390 0.66 0.792399
Target:  5'- gGCGgggGCCGCggCCGagucgacgggagccCGCGgG-GUCGCc -3'
miRNA:   3'- -CGCa--CGGCGaaGGU--------------GCGCgCgCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 4121 0.66 0.791517
Target:  5'- cGCGgccugccGCCGCUcggCCGgGCcggccccggggauCGCGUCGCg -3'
miRNA:   3'- -CGCa------CGGCGAa--GGUgCGc------------GCGCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 56658 0.66 0.789748
Target:  5'- cGUGUaCCGCUgguggacgacggcgCCGCGCGCGC-UCa- -3'
miRNA:   3'- -CGCAcGGCGAa-------------GGUGCGCGCGcAGcg -5'
29394 5' -59.4 NC_006151.1 + 106351 0.66 0.786194
Target:  5'- cGCGgugGacaCGCUggaCGCGgGCGCG-CGCc -3'
miRNA:   3'- -CGCa--Cg--GCGAag-GUGCgCGCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 83094 0.66 0.786194
Target:  5'- cGCGUGCaccucgaGCgggcgcCCGCGC-CG-GUCGCa -3'
miRNA:   3'- -CGCACGg------CGaa----GGUGCGcGCgCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 82000 0.66 0.786194
Target:  5'- gGCG-GCCaggGCggCCGCGUGCGC--CGCc -3'
miRNA:   3'- -CGCaCGG---CGaaGGUGCGCGCGcaGCG- -5'
29394 5' -59.4 NC_006151.1 + 19154 0.66 0.786194
Target:  5'- aGCGUgGCgGUgaagUUCuCGCGCGaGUCGCc -3'
miRNA:   3'- -CGCA-CGgCGa---AGGuGCGCGCgCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 111262 0.66 0.786194
Target:  5'- aGCGagGCCGggaaCCGCGCGgGCGggggguaCGCg -3'
miRNA:   3'- -CGCa-CGGCgaa-GGUGCGCgCGCa------GCG- -5'
29394 5' -59.4 NC_006151.1 + 58122 0.66 0.786194
Target:  5'- gGCGggGUCGCgucgCC-CGCGC-CGUaCGCg -3'
miRNA:   3'- -CGCa-CGGCGaa--GGuGCGCGcGCA-GCG- -5'
29394 5' -59.4 NC_006151.1 + 52923 0.66 0.786194
Target:  5'- aGCGUGaaGa--CCACaaacUGCGCGUCGCc -3'
miRNA:   3'- -CGCACggCgaaGGUGc---GCGCGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.