miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 3' -61.6 NC_006151.1 + 80043 0.66 0.645748
Target:  5'- gGGGagGCGGGaGUCUGGCUGUg---- -3'
miRNA:   3'- gCCCg-CGCCCaCGGGCCGACAauguu -5'
29395 3' -61.6 NC_006151.1 + 46726 0.66 0.645748
Target:  5'- gGGGC-CGGGgccgGCCCGGg-GUcgGCGAa -3'
miRNA:   3'- gCCCGcGCCCa---CGGGCCgaCAa-UGUU- -5'
29395 3' -61.6 NC_006151.1 + 8122 0.66 0.635751
Target:  5'- uCGGaGCGCGGaccccGCCCGGUgggGggGCGGg -3'
miRNA:   3'- -GCC-CGCGCCca---CGGGCCGa--CaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 4779 0.66 0.635751
Target:  5'- aCGGGCaCGGGcccgGCCgCGGCgcgGUaGCGGg -3'
miRNA:   3'- -GCCCGcGCCCa---CGG-GCCGa--CAaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 2624 0.66 0.635751
Target:  5'- gGGGUcCGGG-GCCCGGCgcgGgUGCu- -3'
miRNA:   3'- gCCCGcGCCCaCGGGCCGa--CaAUGuu -5'
29395 3' -61.6 NC_006151.1 + 65698 0.66 0.623752
Target:  5'- cCGGGCGCGGGaucagguaggggGCCucgcgCGGCUGcgcGCGg -3'
miRNA:   3'- -GCCCGCGCCCa-----------CGG-----GCCGACaa-UGUu -5'
29395 3' -61.6 NC_006151.1 + 74318 0.66 0.615756
Target:  5'- uCGuGGUGCGGGUGCaggGGCUGg----- -3'
miRNA:   3'- -GC-CCGCGCCCACGgg-CCGACaauguu -5'
29395 3' -61.6 NC_006151.1 + 101216 0.66 0.615756
Target:  5'- aGGGCcaggcgugGaCGGG-GCCCGGCgGggGCAu -3'
miRNA:   3'- gCCCG--------C-GCCCaCGGGCCGaCaaUGUu -5'
29395 3' -61.6 NC_006151.1 + 13027 0.66 0.605773
Target:  5'- gGGGCGCGGccGaCCCGGCgGUgACc- -3'
miRNA:   3'- gCCCGCGCCcaC-GGGCCGaCAaUGuu -5'
29395 3' -61.6 NC_006151.1 + 111280 0.66 0.605773
Target:  5'- gCGGGCGgGGGguacgcgGCCUGGCcc--ACGAa -3'
miRNA:   3'- -GCCCGCgCCCa------CGGGCCGacaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 130961 0.66 0.605773
Target:  5'- gCGGGCGCGGG-GgCCGGUa------- -3'
miRNA:   3'- -GCCCGCGCCCaCgGGCCGacaauguu -5'
29395 3' -61.6 NC_006151.1 + 141748 0.66 0.605773
Target:  5'- gGGGCGCGGGgcgcgcGcCCCGGUg---GCGu -3'
miRNA:   3'- gCCCGCGCCCa-----C-GGGCCGacaaUGUu -5'
29395 3' -61.6 NC_006151.1 + 131105 0.66 0.595809
Target:  5'- -cGGCGgGGG-GCCCGGCcGcgGCGc -3'
miRNA:   3'- gcCCGCgCCCaCGGGCCGaCaaUGUu -5'
29395 3' -61.6 NC_006151.1 + 5079 0.66 0.595809
Target:  5'- aGGGcCGCGGG-GCCgCGGCgg--GCGc -3'
miRNA:   3'- gCCC-GCGCCCaCGG-GCCGacaaUGUu -5'
29395 3' -61.6 NC_006151.1 + 21334 0.67 0.58587
Target:  5'- gCGcGGCGgGGGU-CCgCGGCUGgaACGg -3'
miRNA:   3'- -GC-CCGCgCCCAcGG-GCCGACaaUGUu -5'
29395 3' -61.6 NC_006151.1 + 4615 0.67 0.575963
Target:  5'- gGGGCGCGuGGa-CCCGGCgcugGCAGa -3'
miRNA:   3'- gCCCGCGC-CCacGGGCCGacaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 62108 0.67 0.575963
Target:  5'- uGGGCGCGGccgugGUCgGGCUGaUGCu- -3'
miRNA:   3'- gCCCGCGCCca---CGGgCCGACaAUGuu -5'
29395 3' -61.6 NC_006151.1 + 4233 0.67 0.575963
Target:  5'- gCGGGCGCGGGcaGCCgGaGCgg--GCAGg -3'
miRNA:   3'- -GCCCGCGCCCa-CGGgC-CGacaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 15048 0.67 0.575963
Target:  5'- aCGGcGCGCGGG-GcCCCGGCgccuucUGCGc -3'
miRNA:   3'- -GCC-CGCGCCCaC-GGGCCGaca---AUGUu -5'
29395 3' -61.6 NC_006151.1 + 96601 0.67 0.574974
Target:  5'- cCGGGCGCGGGcgcgccgacgucgUGCCCgagGGCgc--GCAGc -3'
miRNA:   3'- -GCCCGCGCCC-------------ACGGG---CCGacaaUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.