miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 5' -52.3 NC_006151.1 + 24600 0.66 0.98403
Target:  5'- -cUUGACGucgcGAUGCAUgAUGCGCaUCCCg -3'
miRNA:   3'- caAACUGU----CUGUGUG-UGCGCGcAGGG- -5'
29395 5' -52.3 NC_006151.1 + 45206 0.66 0.98403
Target:  5'- ---cGACGGgguGCGC-CGCGCucGCGUUCCc -3'
miRNA:   3'- caaaCUGUC---UGUGuGUGCG--CGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 52040 0.66 0.98403
Target:  5'- ---aGGCcGGCGCcguCGCGUGCGUguagCCCa -3'
miRNA:   3'- caaaCUGuCUGUGu--GUGCGCGCA----GGG- -5'
29395 5' -52.3 NC_006151.1 + 56586 0.66 0.98403
Target:  5'- ---cGACGGGCugGUGCGgaCGCGcCCCg -3'
miRNA:   3'- caaaCUGUCUGugUGUGC--GCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 64124 0.66 0.98403
Target:  5'- ---cGGCGGugGCGCGC-C-CGUCUCg -3'
miRNA:   3'- caaaCUGUCugUGUGUGcGcGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 8353 0.66 0.98403
Target:  5'- ---cGcCGGACGCGgAgGCGCGaggCCCc -3'
miRNA:   3'- caaaCuGUCUGUGUgUgCGCGCa--GGG- -5'
29395 5' -52.3 NC_006151.1 + 28574 0.66 0.98403
Target:  5'- ---cGGgAGcccGCAUugGCcgGCGCGUCCCc -3'
miRNA:   3'- caaaCUgUC---UGUGugUG--CGCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 30555 0.66 0.98403
Target:  5'- cGUUccGC-GcCGCACGCGC-CGUCCCg -3'
miRNA:   3'- -CAAacUGuCuGUGUGUGCGcGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 35202 0.66 0.98403
Target:  5'- ---cGGgAGACGC-CucCGCGCG-CCCa -3'
miRNA:   3'- caaaCUgUCUGUGuGu-GCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 65828 0.66 0.98403
Target:  5'- ---gGGCGGcCGCGC-CaGCGCGgCCCg -3'
miRNA:   3'- caaaCUGUCuGUGUGuG-CGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 105330 0.66 0.98403
Target:  5'- --cUGGCcgAGGCccGCGCGCGCGCG-CUg -3'
miRNA:   3'- caaACUG--UCUG--UGUGUGCGCGCaGGg -5'
29395 5' -52.3 NC_006151.1 + 62359 0.66 0.98287
Target:  5'- ---gGGgAGACGCACggcgucgucaucgggACGCGCGccgUCCUg -3'
miRNA:   3'- caaaCUgUCUGUGUG---------------UGCGCGC---AGGG- -5'
29395 5' -52.3 NC_006151.1 + 117613 0.66 0.982061
Target:  5'- ---aGACcguGGGCuCGCGCGCgaGCGUgCCCa -3'
miRNA:   3'- caaaCUG---UCUGuGUGUGCG--CGCA-GGG- -5'
29395 5' -52.3 NC_006151.1 + 28127 0.66 0.982061
Target:  5'- ---cGGCucgGGGCGCGCucCGCGCcucUCCCg -3'
miRNA:   3'- caaaCUG---UCUGUGUGu-GCGCGc--AGGG- -5'
29395 5' -52.3 NC_006151.1 + 60155 0.66 0.982061
Target:  5'- ---cGACAGGCGCGC-CG-GCcagCCCg -3'
miRNA:   3'- caaaCUGUCUGUGUGuGCgCGca-GGG- -5'
29395 5' -52.3 NC_006151.1 + 31434 0.66 0.982061
Target:  5'- ---gGACGGgguGCGCGCGCGUGUGUgUa -3'
miRNA:   3'- caaaCUGUC---UGUGUGUGCGCGCAgGg -5'
29395 5' -52.3 NC_006151.1 + 85774 0.66 0.982061
Target:  5'- --cUGGCgcuGGACGCgcacucgauccGCGCGCGCGUgCa -3'
miRNA:   3'- caaACUG---UCUGUG-----------UGUGCGCGCAgGg -5'
29395 5' -52.3 NC_006151.1 + 102938 0.66 0.982061
Target:  5'- ---cGGCuGcGCGCGCugGaCGCGgcgCCCg -3'
miRNA:   3'- caaaCUGuC-UGUGUGugC-GCGCa--GGG- -5'
29395 5' -52.3 NC_006151.1 + 104657 0.66 0.982061
Target:  5'- ---cGGCcgccGACGCgGCGCGCGCG-CUCg -3'
miRNA:   3'- caaaCUGu---CUGUG-UGUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 57131 0.66 0.981855
Target:  5'- ---cGGCGGucGCcccuGCGCACGCggcgggggcgaggGCGUCCCc -3'
miRNA:   3'- caaaCUGUC--UG----UGUGUGCG-------------CGCAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.