miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29396 5' -63.8 NC_006151.1 + 85912 0.65 0.581187
Target:  5'- uGGCCGugcaguacgaggaGgGGCuGGGCCuGCUGcUGCAGc -3'
miRNA:   3'- -CCGGC-------------UgCCG-CCCGG-CGACcACGUCu -5'
29396 5' -63.8 NC_006151.1 + 22074 0.66 0.572524
Target:  5'- aGGCCacGugGGCgcgguacguGGGCCGCcGGUGgGc- -3'
miRNA:   3'- -CCGG--CugCCG---------CCCGGCGaCCACgUcu -5'
29396 5' -63.8 NC_006151.1 + 30615 0.66 0.572524
Target:  5'- gGGCgGuCGGCGuGCgCGCU-GUGCGGGu -3'
miRNA:   3'- -CCGgCuGCCGCcCG-GCGAcCACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 91746 0.66 0.572524
Target:  5'- cGGCgGGCGaGCGGGCUcggGCgggcGGUGUgcgccAGAc -3'
miRNA:   3'- -CCGgCUGC-CGCCCGG---CGa---CCACG-----UCU- -5'
29396 5' -63.8 NC_006151.1 + 92566 0.66 0.572524
Target:  5'- uGGCCGAgucgcUGGaGGGCCGCgaGGUGg--- -3'
miRNA:   3'- -CCGGCU-----GCCgCCCGGCGa-CCACgucu -5'
29396 5' -63.8 NC_006151.1 + 126135 0.66 0.572524
Target:  5'- gGGgCGcuCGccauCGGGCUGCUGGUGCuGGc -3'
miRNA:   3'- -CCgGCu-GCc---GCCCGGCGACCACGuCU- -5'
29396 5' -63.8 NC_006151.1 + 50636 0.66 0.572524
Target:  5'- cGCCu-CGGCGacGGCCGC-GG-GCGGAc -3'
miRNA:   3'- cCGGcuGCCGC--CCGGCGaCCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 75894 0.66 0.572524
Target:  5'- cGCgCGACGGCcaccgaGGG-CGC-GGUGCAGu -3'
miRNA:   3'- cCG-GCUGCCG------CCCgGCGaCCACGUCu -5'
29396 5' -63.8 NC_006151.1 + 103790 0.66 0.569642
Target:  5'- cGCUGGCGGCGcugcaGGCCGCgcugucggcggccgUGGcgGCGGc -3'
miRNA:   3'- cCGGCUGCCGC-----CCGGCG--------------ACCa-CGUCu -5'
29396 5' -63.8 NC_006151.1 + 133627 0.66 0.562934
Target:  5'- gGGUcgCGGCGGCcgGGGCgGUgguccgGGUGCgAGAg -3'
miRNA:   3'- -CCG--GCUGCCG--CCCGgCGa-----CCACG-UCU- -5'
29396 5' -63.8 NC_006151.1 + 20155 0.66 0.562934
Target:  5'- cGGCgCGugGaccgcCGGGCCGCgcccgGGUcGCGGc -3'
miRNA:   3'- -CCG-GCugCc----GCCCGGCGa----CCA-CGUCu -5'
29396 5' -63.8 NC_006151.1 + 56567 0.66 0.562934
Target:  5'- cGGgCGACGcGCcgccGCCcgacggGCUGGUGCGGAc -3'
miRNA:   3'- -CCgGCUGC-CGcc--CGG------CGACCACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 117254 0.66 0.562934
Target:  5'- gGGcCCGAgGcGCGGGCCGCgc--GCGGc -3'
miRNA:   3'- -CC-GGCUgC-CGCCCGGCGaccaCGUCu -5'
29396 5' -63.8 NC_006151.1 + 132038 0.66 0.562934
Target:  5'- aGCCGGCGGCGcGCgGCaGcGcgGCGGAg -3'
miRNA:   3'- cCGGCUGCCGCcCGgCGaC-Ca-CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 119041 0.66 0.562934
Target:  5'- cGCCaagGACGGCGGcGCCGC-GGccgccuccGCGGGc -3'
miRNA:   3'- cCGG---CUGCCGCC-CGGCGaCCa-------CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 56195 0.66 0.5572
Target:  5'- uGCCGcCGGUGGcGCUGCcgcaccgccuggcccUGGUGCGc- -3'
miRNA:   3'- cCGGCuGCCGCC-CGGCG---------------ACCACGUcu -5'
29396 5' -63.8 NC_006151.1 + 129217 0.66 0.553387
Target:  5'- gGGCCGcCaGCaGGCaGCUGGcGCGGGu -3'
miRNA:   3'- -CCGGCuGcCGcCCGgCGACCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 95394 0.66 0.553387
Target:  5'- cGCCG--GGCGuGGcCCGCUGcacgaucuccGUGCAGAg -3'
miRNA:   3'- cCGGCugCCGC-CC-GGCGAC----------CACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 56297 0.66 0.553387
Target:  5'- cGGCgGA-GGCGGacGCCGCgcGGUGCcuGAg -3'
miRNA:   3'- -CCGgCUgCCGCC--CGGCGa-CCACGu-CU- -5'
29396 5' -63.8 NC_006151.1 + 5546 0.66 0.553387
Target:  5'- cGCCucgcGGCGGCGGGCUcgucgagcagggGCUcgcGGUGCuGGu -3'
miRNA:   3'- cCGG----CUGCCGCCCGG------------CGA---CCACGuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.