miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29397 3' -57.6 NC_006151.1 + 39771 0.66 0.79242
Target:  5'- ---cGGGCGCcGCcuucggGCAccGCGCGGCCAa -3'
miRNA:   3'- aagaCCUGCGaCGa-----CGU--CGCGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 103848 0.66 0.79242
Target:  5'- ---cGGGCG--GCUGCGcGCGCAGCCc -3'
miRNA:   3'- aagaCCUGCgaCGACGU-CGCGUUGGu -5'
29397 3' -57.6 NC_006151.1 + 102497 0.66 0.786836
Target:  5'- cUUCaUGGACGCcGCggcgcgggaccccgGCGGCGUcuacGACCAg -3'
miRNA:   3'- -AAG-ACCUGCGaCGa-------------CGUCGCG----UUGGU- -5'
29397 3' -57.6 NC_006151.1 + 73384 0.66 0.783085
Target:  5'- ---cGGGgGC-GC-GCAGCGCGGCCGc -3'
miRNA:   3'- aagaCCUgCGaCGaCGUCGCGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 39278 0.66 0.783085
Target:  5'- ---gGGGUGCUGCUGCucucGGCGCGggACCu -3'
miRNA:   3'- aagaCCUGCGACGACG----UCGCGU--UGGu -5'
29397 3' -57.6 NC_006151.1 + 128032 0.66 0.764001
Target:  5'- gUCUGcGACGCccGCgGCAGCgGCGGCa- -3'
miRNA:   3'- aAGAC-CUGCGa-CGaCGUCG-CGUUGgu -5'
29397 3' -57.6 NC_006151.1 + 75433 0.66 0.764001
Target:  5'- --gUGGGCGCgaaGCUGCcGGCGUGGCg- -3'
miRNA:   3'- aagACCUGCGa--CGACG-UCGCGUUGgu -5'
29397 3' -57.6 NC_006151.1 + 119991 0.66 0.764001
Target:  5'- -cCUGGcgcggcgcACGCUGCUgGCGGUGCugcagGACCu -3'
miRNA:   3'- aaGACC--------UGCGACGA-CGUCGCG-----UUGGu -5'
29397 3' -57.6 NC_006151.1 + 139303 0.66 0.754272
Target:  5'- gUCUGcGGCGCgUGCUGCucgaccGUGCucGCCGg -3'
miRNA:   3'- aAGAC-CUGCG-ACGACGu-----CGCGu-UGGU- -5'
29397 3' -57.6 NC_006151.1 + 86713 0.66 0.754272
Target:  5'- -gCUGGGaGCUGgUcGCGGCGCGccGCCGc -3'
miRNA:   3'- aaGACCUgCGACgA-CGUCGCGU--UGGU- -5'
29397 3' -57.6 NC_006151.1 + 98373 0.67 0.74443
Target:  5'- cUCUGGGCGCgcGC-GCuGCGCcuGGCCu -3'
miRNA:   3'- aAGACCUGCGa-CGaCGuCGCG--UUGGu -5'
29397 3' -57.6 NC_006151.1 + 75125 0.67 0.74443
Target:  5'- -gCUGGuCgGCgGCcgGCGGCGCGGCCc -3'
miRNA:   3'- aaGACCuG-CGaCGa-CGUCGCGUUGGu -5'
29397 3' -57.6 NC_006151.1 + 86676 0.67 0.74443
Target:  5'- cUCUcGACgGCcgugaacaacaUGCUGCuGCGCGACCGc -3'
miRNA:   3'- aAGAcCUG-CG-----------ACGACGuCGCGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 95953 0.67 0.74443
Target:  5'- cUCUGcagcgagagcccGACGCcGCcGCGGCGCAGCa- -3'
miRNA:   3'- aAGAC------------CUGCGaCGaCGUCGCGUUGgu -5'
29397 3' -57.6 NC_006151.1 + 85835 0.67 0.734487
Target:  5'- -cCUGGugGC-GCUGgAGCuGCAgaaccGCCAg -3'
miRNA:   3'- aaGACCugCGaCGACgUCG-CGU-----UGGU- -5'
29397 3' -57.6 NC_006151.1 + 92765 0.67 0.734487
Target:  5'- -cCUGaGCG-UGCUGCGGCGCGuccCCAu -3'
miRNA:   3'- aaGACcUGCgACGACGUCGCGUu--GGU- -5'
29397 3' -57.6 NC_006151.1 + 99121 0.67 0.72445
Target:  5'- -gCUGG-CGCUGCUGgaccccggGGCGCAgGCCGu -3'
miRNA:   3'- aaGACCuGCGACGACg-------UCGCGU-UGGU- -5'
29397 3' -57.6 NC_006151.1 + 67014 0.67 0.718388
Target:  5'- uUUCUGGccACGgUGCUGCucggggaccacgccgAGCGC-GCCAc -3'
miRNA:   3'- -AAGACC--UGCgACGACG---------------UCGCGuUGGU- -5'
29397 3' -57.6 NC_006151.1 + 129089 0.67 0.714332
Target:  5'- cUCggGGGCGUaGUUGCuGCGCAcgagcGCCAg -3'
miRNA:   3'- aAGa-CCUGCGaCGACGuCGCGU-----UGGU- -5'
29397 3' -57.6 NC_006151.1 + 105329 0.67 0.714332
Target:  5'- -cCUGGccgaggcccgcGCGCgcgcGCUGCAGacgGCGACCAu -3'
miRNA:   3'- aaGACC-----------UGCGa---CGACGUCg--CGUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.