miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29397 5' -56.1 NC_006151.1 + 40161 0.66 0.897028
Target:  5'- cCGCGGCccGCUcgGGCCcaucAAGGugGAggcCAUCu -3'
miRNA:   3'- -GCGCCGa-CGA--CUGG----UUCCugCU---GUAG- -5'
29397 5' -56.1 NC_006151.1 + 136595 0.66 0.897028
Target:  5'- gCGCGGCUccGCgagcACCu-GGACGcCGUCa -3'
miRNA:   3'- -GCGCCGA--CGac--UGGuuCCUGCuGUAG- -5'
29397 5' -56.1 NC_006151.1 + 130628 0.66 0.897028
Target:  5'- uCGCGGCUcacgaGCgccGCCGAGGccgccuGCGGCGUg -3'
miRNA:   3'- -GCGCCGA-----CGac-UGGUUCC------UGCUGUAg -5'
29397 5' -56.1 NC_006151.1 + 88865 0.66 0.897028
Target:  5'- cCGCGGgaGCUccgGGCgCGGGGGCu-CGUCa -3'
miRNA:   3'- -GCGCCgaCGA---CUG-GUUCCUGcuGUAG- -5'
29397 5' -56.1 NC_006151.1 + 87194 0.66 0.897028
Target:  5'- cCGCaGCUGCUGccGCCcGGGGC--CGUCg -3'
miRNA:   3'- -GCGcCGACGAC--UGGuUCCUGcuGUAG- -5'
29397 5' -56.1 NC_006151.1 + 50228 0.66 0.897028
Target:  5'- uGCGGCUGC--ACCG-GGACaACGUg -3'
miRNA:   3'- gCGCCGACGacUGGUuCCUGcUGUAg -5'
29397 5' -56.1 NC_006151.1 + 84780 0.66 0.897028
Target:  5'- aCGCGGCgcGCgccGCCGAGGaggcgcccgagGCGACcgCg -3'
miRNA:   3'- -GCGCCGa-CGac-UGGUUCC-----------UGCUGuaG- -5'
29397 5' -56.1 NC_006151.1 + 105293 0.66 0.890354
Target:  5'- gCGCGGCcGCgccgGcgccuCCGAGGACGAgGc- -3'
miRNA:   3'- -GCGCCGaCGa---Cu----GGUUCCUGCUgUag -5'
29397 5' -56.1 NC_006151.1 + 105754 0.66 0.890354
Target:  5'- gCGUGGCgGCgcGCCuGGGcgaccGCGACGUCa -3'
miRNA:   3'- -GCGCCGaCGacUGGuUCC-----UGCUGUAG- -5'
29397 5' -56.1 NC_006151.1 + 5244 0.66 0.890354
Target:  5'- gCGCGGCggcgGCgggGGCCcgGGGGGCGGa--- -3'
miRNA:   3'- -GCGCCGa---CGa--CUGG--UUCCUGCUguag -5'
29397 5' -56.1 NC_006151.1 + 114115 0.66 0.887619
Target:  5'- gGCGGCUGCUGccccacgugcgccGCCGccgagccgcggcucGGGcgcaGCGACcgCg -3'
miRNA:   3'- gCGCCGACGAC-------------UGGU--------------UCC----UGCUGuaG- -5'
29397 5' -56.1 NC_006151.1 + 22203 0.66 0.883449
Target:  5'- cCGCGGg-GCcGACgAAGGGCGAggggacCGUCg -3'
miRNA:   3'- -GCGCCgaCGaCUGgUUCCUGCU------GUAG- -5'
29397 5' -56.1 NC_006151.1 + 105151 0.66 0.883449
Target:  5'- uCGaCGGCcGCgGGCCcauGGACGAguUCg -3'
miRNA:   3'- -GC-GCCGaCGaCUGGuu-CCUGCUguAG- -5'
29397 5' -56.1 NC_006151.1 + 102708 0.66 0.883449
Target:  5'- gGCGGC-GC-GGCCGAGccgaacacgcGCGACGUCa -3'
miRNA:   3'- gCGCCGaCGaCUGGUUCc---------UGCUGUAG- -5'
29397 5' -56.1 NC_006151.1 + 90740 0.66 0.883449
Target:  5'- gGCGGCgGCgcccUCGGGGGCGGCGg- -3'
miRNA:   3'- gCGCCGaCGacu-GGUUCCUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 21681 0.66 0.883449
Target:  5'- gGgGGCUGCUGGu--AGaACGGCGUCa -3'
miRNA:   3'- gCgCCGACGACUgguUCcUGCUGUAG- -5'
29397 5' -56.1 NC_006151.1 + 118175 0.66 0.876319
Target:  5'- gCGCGGC--CUGACCGucgAGGcCGGCuUCg -3'
miRNA:   3'- -GCGCCGacGACUGGU---UCCuGCUGuAG- -5'
29397 5' -56.1 NC_006151.1 + 5333 0.66 0.868967
Target:  5'- cCGCGGCcGC-GGCgGAGGGCGcCcUCu -3'
miRNA:   3'- -GCGCCGaCGaCUGgUUCCUGCuGuAG- -5'
29397 5' -56.1 NC_006151.1 + 84657 0.67 0.8614
Target:  5'- cCGCgGGCgcGCgccucgaGGCCGAGGugGACGa- -3'
miRNA:   3'- -GCG-CCGa-CGa------CUGGUUCCugCUGUag -5'
29397 5' -56.1 NC_006151.1 + 103386 0.67 0.8614
Target:  5'- uGCGGCUGCgcgcGCUgcuGGGCGACu-- -3'
miRNA:   3'- gCGCCGACGac--UGGuu-CCUGCUGuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.