Results 1 - 20 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 99660 | 0.66 | 0.642864 |
Target: 5'- ----cCUUCCGCGcGCAgAGCCGCUgGGg -3' miRNA: 3'- gacaaGGGGGCGC-CGU-UCGGCGGgCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 79086 | 0.66 | 0.642864 |
Target: 5'- ----gCCCCCGCGcgcGCGAGCgagCGCCCc- -3' miRNA: 3'- gacaaGGGGGCGC---CGUUCG---GCGGGcc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 53513 | 0.66 | 0.642864 |
Target: 5'- gUGcUCCgCCGCGcGCcccguGAGCCGCuCCaGGg -3' miRNA: 3'- gACaAGGgGGCGC-CG-----UUCGGCG-GG-CC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 87526 | 0.66 | 0.642864 |
Target: 5'- -cGcgCCCgCCuCGGCcccccAGCCGCCCGu -3' miRNA: 3'- gaCaaGGG-GGcGCCGu----UCGGCGGGCc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 44167 | 0.66 | 0.642864 |
Target: 5'- -cGUgCCCCUGgGaGCAccgcgggucGCCGUCCGGg -3' miRNA: 3'- gaCAaGGGGGCgC-CGUu--------CGGCGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 87307 | 0.66 | 0.642864 |
Target: 5'- ---cUCgCCCGUGGCGcacGCCGUgCCGGc -3' miRNA: 3'- gacaAGgGGGCGCCGUu--CGGCG-GGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 32238 | 0.66 | 0.633108 |
Target: 5'- ---cUCCUggCCGCGGCGAccGCCGCCg-- -3' miRNA: 3'- gacaAGGG--GGCGCCGUU--CGGCGGgcc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 39957 | 0.66 | 0.633108 |
Target: 5'- gCUGa--CCCCG-GGCGccgucGCCGCCgCGGg -3' miRNA: 3'- -GACaagGGGGCgCCGUu----CGGCGG-GCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 71935 | 0.66 | 0.633108 |
Target: 5'- aUGUUCagcaCCaGCGaGCGcguGGCCGCCuCGGc -3' miRNA: 3'- gACAAGg---GGgCGC-CGU---UCGGCGG-GCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 13430 | 0.66 | 0.633108 |
Target: 5'- -cGcgUCCCCGgGGCccgcauuGGCCGguCCCGGa -3' miRNA: 3'- gaCaaGGGGGCgCCGu------UCGGC--GGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 15128 | 0.66 | 0.633108 |
Target: 5'- ---cUCUUUCGCGGCAucGCCGUCuCGGc -3' miRNA: 3'- gacaAGGGGGCGCCGUu-CGGCGG-GCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 104535 | 0.66 | 0.633108 |
Target: 5'- ---cUUCCCCGaguacgaGGCcgagcuGGCCGCCCuGGg -3' miRNA: 3'- gacaAGGGGGCg------CCGu-----UCGGCGGG-CC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 1692 | 0.66 | 0.633108 |
Target: 5'- ---cUCCgCCGCGGCc-GCCGCCg-- -3' miRNA: 3'- gacaAGGgGGCGCCGuuCGGCGGgcc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 70628 | 0.66 | 0.633108 |
Target: 5'- ---aUCCUCgGCGGCGccguGGCCGCgCGc -3' miRNA: 3'- gacaAGGGGgCGCCGU----UCGGCGgGCc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 134406 | 0.66 | 0.633108 |
Target: 5'- ---aUCCCCUGCccgcGCGAGCUGgugcugcccCCCGGg -3' miRNA: 3'- gacaAGGGGGCGc---CGUUCGGC---------GGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 142280 | 0.66 | 0.623351 |
Target: 5'- ----gUCCCgGCGGCcAGaCCGgCCGGg -3' miRNA: 3'- gacaaGGGGgCGCCGuUC-GGCgGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 60855 | 0.66 | 0.623351 |
Target: 5'- gUGgcgUCCaugacgaggaCCCGCGGCAgccgcgcagcAGCCGCgCGa -3' miRNA: 3'- gACa--AGG----------GGGCGCCGU----------UCGGCGgGCc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 101536 | 0.66 | 0.623351 |
Target: 5'- ----gCCUUCGUGGCGcGCCugcGCCCGGc -3' miRNA: 3'- gacaaGGGGGCGCCGUuCGG---CGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 40403 | 0.66 | 0.623351 |
Target: 5'- uCUGcgUCCgCgGCGGC-GGCCucgguccccucgGCCCGGc -3' miRNA: 3'- -GACa-AGGgGgCGCCGuUCGG------------CGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 26340 | 0.66 | 0.623351 |
Target: 5'- ----gCCCgCCucacggggcgGCGGCGGGCCGCgUCGGg -3' miRNA: 3'- gacaaGGG-GG----------CGCCGUUCGGCG-GGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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