miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 5' -62.7 NC_006151.1 + 87307 0.66 0.642864
Target:  5'- ---cUCgCCCGUGGCGcacGCCGUgCCGGc -3'
miRNA:   3'- gacaAGgGGGCGCCGUu--CGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 44167 0.66 0.642864
Target:  5'- -cGUgCCCCUGgGaGCAccgcgggucGCCGUCCGGg -3'
miRNA:   3'- gaCAaGGGGGCgC-CGUu--------CGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 87526 0.66 0.642864
Target:  5'- -cGcgCCCgCCuCGGCcccccAGCCGCCCGu -3'
miRNA:   3'- gaCaaGGG-GGcGCCGu----UCGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 53513 0.66 0.642864
Target:  5'- gUGcUCCgCCGCGcGCcccguGAGCCGCuCCaGGg -3'
miRNA:   3'- gACaAGGgGGCGC-CG-----UUCGGCG-GG-CC- -5'
29398 5' -62.7 NC_006151.1 + 79086 0.66 0.642864
Target:  5'- ----gCCCCCGCGcgcGCGAGCgagCGCCCc- -3'
miRNA:   3'- gacaaGGGGGCGC---CGUUCG---GCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 99660 0.66 0.642864
Target:  5'- ----cCUUCCGCGcGCAgAGCCGCUgGGg -3'
miRNA:   3'- gacaaGGGGGCGC-CGU-UCGGCGGgCC- -5'
29398 5' -62.7 NC_006151.1 + 39957 0.66 0.633108
Target:  5'- gCUGa--CCCCG-GGCGccgucGCCGCCgCGGg -3'
miRNA:   3'- -GACaagGGGGCgCCGUu----CGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 71935 0.66 0.633108
Target:  5'- aUGUUCagcaCCaGCGaGCGcguGGCCGCCuCGGc -3'
miRNA:   3'- gACAAGg---GGgCGC-CGU---UCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 13430 0.66 0.633108
Target:  5'- -cGcgUCCCCGgGGCccgcauuGGCCGguCCCGGa -3'
miRNA:   3'- gaCaaGGGGGCgCCGu------UCGGC--GGGCC- -5'
29398 5' -62.7 NC_006151.1 + 15128 0.66 0.633108
Target:  5'- ---cUCUUUCGCGGCAucGCCGUCuCGGc -3'
miRNA:   3'- gacaAGGGGGCGCCGUu-CGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 32238 0.66 0.633108
Target:  5'- ---cUCCUggCCGCGGCGAccGCCGCCg-- -3'
miRNA:   3'- gacaAGGG--GGCGCCGUU--CGGCGGgcc -5'
29398 5' -62.7 NC_006151.1 + 104535 0.66 0.633108
Target:  5'- ---cUUCCCCGaguacgaGGCcgagcuGGCCGCCCuGGg -3'
miRNA:   3'- gacaAGGGGGCg------CCGu-----UCGGCGGG-CC- -5'
29398 5' -62.7 NC_006151.1 + 1692 0.66 0.633108
Target:  5'- ---cUCCgCCGCGGCc-GCCGCCg-- -3'
miRNA:   3'- gacaAGGgGGCGCCGuuCGGCGGgcc -5'
29398 5' -62.7 NC_006151.1 + 70628 0.66 0.633108
Target:  5'- ---aUCCUCgGCGGCGccguGGCCGCgCGc -3'
miRNA:   3'- gacaAGGGGgCGCCGU----UCGGCGgGCc -5'
29398 5' -62.7 NC_006151.1 + 134406 0.66 0.633108
Target:  5'- ---aUCCCCUGCccgcGCGAGCUGgugcugcccCCCGGg -3'
miRNA:   3'- gacaAGGGGGCGc---CGUUCGGC---------GGGCC- -5'
29398 5' -62.7 NC_006151.1 + 26340 0.66 0.623351
Target:  5'- ----gCCCgCCucacggggcgGCGGCGGGCCGCgUCGGg -3'
miRNA:   3'- gacaaGGG-GG----------CGCCGUUCGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 40403 0.66 0.623351
Target:  5'- uCUGcgUCCgCgGCGGC-GGCCucgguccccucgGCCCGGc -3'
miRNA:   3'- -GACa-AGGgGgCGCCGuUCGG------------CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 101536 0.66 0.623351
Target:  5'- ----gCCUUCGUGGCGcGCCugcGCCCGGc -3'
miRNA:   3'- gacaaGGGGGCGCCGUuCGG---CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 60855 0.66 0.623351
Target:  5'- gUGgcgUCCaugacgaggaCCCGCGGCAgccgcgcagcAGCCGCgCGa -3'
miRNA:   3'- gACa--AGG----------GGGCGCCGU----------UCGGCGgGCc -5'
29398 5' -62.7 NC_006151.1 + 131923 0.66 0.623351
Target:  5'- -aGggCCUCCGCGGUgcuGCCGUagCUGGc -3'
miRNA:   3'- gaCaaGGGGGCGCCGuu-CGGCG--GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.