miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 5' -62.7 NC_006151.1 + 123769 0.67 0.555579
Target:  5'- -cGggCCCCgGgGGCAu-CgGCCCGGg -3'
miRNA:   3'- gaCaaGGGGgCgCCGUucGgCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 120447 1.08 0.00082
Target:  5'- gCUGUUCCCCCGCGGCAAGCCGCCCGGc -3'
miRNA:   3'- -GACAAGGGGGCGCCGUUCGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 118211 0.66 0.6136
Target:  5'- -cGUggCCgUgGUGGCGGG-CGCCCGGa -3'
miRNA:   3'- gaCAa-GGgGgCGCCGUUCgGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 117572 0.68 0.499259
Target:  5'- -gGgcUCCCCGCGGaggauGGGCCGCgUGGc -3'
miRNA:   3'- gaCaaGGGGGCGCCg----UUCGGCGgGCC- -5'
29398 5' -62.7 NC_006151.1 + 117164 0.7 0.395356
Target:  5'- gCUGUUgCUCgagaCGCGGUAgaagGGCCGCCgGGg -3'
miRNA:   3'- -GACAAgGGG----GCGCCGU----UCGGCGGgCC- -5'
29398 5' -62.7 NC_006151.1 + 117015 0.74 0.239177
Target:  5'- -cGcUCCCCCGCGGgccCGGGCCGCaggCGGu -3'
miRNA:   3'- gaCaAGGGGGCGCC---GUUCGGCGg--GCC- -5'
29398 5' -62.7 NC_006151.1 + 116517 0.69 0.420033
Target:  5'- gCUGUUCUggCCCGCGucguagacGCGgaacuGGCCGCCgCGGu -3'
miRNA:   3'- -GACAAGG--GGGCGC--------CGU-----UCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 115876 0.67 0.527139
Target:  5'- ----aCCCCCGCGuGCAcaaaguagAGCCGCUCc- -3'
miRNA:   3'- gacaaGGGGGCGC-CGU--------UCGGCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 114105 0.7 0.403477
Target:  5'- cCUGggCCUCgGCGGCu-GCUGCCCc- -3'
miRNA:   3'- -GACaaGGGGgCGCCGuuCGGCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 113872 0.68 0.472055
Target:  5'- -cGgcggCUCCUGCGGCGcaagucgucGGCCGCgCGGc -3'
miRNA:   3'- gaCaa--GGGGGCGCCGU---------UCGGCGgGCC- -5'
29398 5' -62.7 NC_006151.1 + 113751 0.68 0.499259
Target:  5'- gCUGUUCCCgCCGaaGCccacucccGAGCCGCCUu- -3'
miRNA:   3'- -GACAAGGG-GGCgcCG--------UUCGGCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 112582 0.66 0.593172
Target:  5'- ---cUCgCCCGCgGGCuucguggAGGCCGCCgCGGc -3'
miRNA:   3'- gacaAGgGGGCG-CCG-------UUCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 111299 0.68 0.481042
Target:  5'- cCUGg-CCCacgaaCGCGGC-GGCCgcguGCCCGGg -3'
miRNA:   3'- -GACaaGGGg----GCGCCGuUCGG----CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 111134 0.75 0.180317
Target:  5'- uCUGUgcgcgCCCCCGCGcGCGcGGCCGCCUu- -3'
miRNA:   3'- -GACAa----GGGGGCGC-CGU-UCGGCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 109943 0.66 0.594143
Target:  5'- ---cUCCCCUggGCGGCcucGGCCGCgucuggcccacCCGGg -3'
miRNA:   3'- gacaAGGGGG--CGCCGu--UCGGCG-----------GGCC- -5'
29398 5' -62.7 NC_006151.1 + 109411 0.67 0.564202
Target:  5'- ----aCCUUCGCGGCcGGCCGCaccaccgCCGGc -3'
miRNA:   3'- gacaaGGGGGCGCCGuUCGGCG-------GGCC- -5'
29398 5' -62.7 NC_006151.1 + 109279 0.7 0.371634
Target:  5'- gCUGgccgCCCCCuccgagaucgaGCGGCccGCCGCCuCGGc -3'
miRNA:   3'- -GACaa--GGGGG-----------CGCCGuuCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 109224 0.66 0.593172
Target:  5'- ---cUCCCgCCcCGGCGcagacccAGCCGCCgCGGu -3'
miRNA:   3'- gacaAGGG-GGcGCCGU-------UCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 108941 0.71 0.334306
Target:  5'- --cUUCCgCCCGCGGCucaacccgaGGGCCGuccuCCCGGa -3'
miRNA:   3'- gacAAGG-GGGCGCCG---------UUCGGC----GGGCC- -5'
29398 5' -62.7 NC_006151.1 + 108295 0.69 0.419196
Target:  5'- -cGUcugCCCCgGCGGCGAcccccacGCCccccgcGCCCGGg -3'
miRNA:   3'- gaCAa--GGGGgCGCCGUU-------CGG------CGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.