miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29399 5' -60.5 NC_006151.1 + 114050 0.66 0.740911
Target:  5'- aCCUCGgccagGCGGuGGCCgaCAAcUGCCUg -3'
miRNA:   3'- cGGAGCa----UGCC-CCGGgaGUUcGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 4245 0.66 0.740911
Target:  5'- aGCCggagCGgGCaGGGCag-CAGGCGCUCg -3'
miRNA:   3'- -CGGa---GCaUGcCCCGggaGUUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 5337 0.66 0.740911
Target:  5'- gGCCgcggCGga-GGGcGCCCUCuccGGCGCg- -3'
miRNA:   3'- -CGGa---GCaugCCC-CGGGAGu--UCGCGgg -5'
29399 5' -60.5 NC_006151.1 + 40430 0.66 0.740911
Target:  5'- cCCUCGgccCGGcGGCgcuugCCUCcccGGCGCCUg -3'
miRNA:   3'- cGGAGCau-GCC-CCG-----GGAGu--UCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 103461 0.66 0.740911
Target:  5'- cGCC-CGUGCcGGGCacggugCUCGcggcgcuguGGCGCCUg -3'
miRNA:   3'- -CGGaGCAUGcCCCGg-----GAGU---------UCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 114854 0.66 0.740911
Target:  5'- aCCaCGUagGCGGGGUCCUCGgccaGGuCGCUg -3'
miRNA:   3'- cGGaGCA--UGCCCCGGGAGU----UC-GCGGg -5'
29399 5' -60.5 NC_006151.1 + 67827 0.66 0.740911
Target:  5'- cGCCgUCGUcgucGCGGGGgC-UC-AGCaGCCCg -3'
miRNA:   3'- -CGG-AGCA----UGCCCCgGgAGuUCG-CGGG- -5'
29399 5' -60.5 NC_006151.1 + 74642 0.66 0.740911
Target:  5'- uCCUUGUacACGGcGGCgcaguCCUCGGGCagcuccccguuGCCCa -3'
miRNA:   3'- cGGAGCA--UGCC-CCG-----GGAGUUCG-----------CGGG- -5'
29399 5' -60.5 NC_006151.1 + 86093 0.66 0.740911
Target:  5'- cGCCgcCGccAUGGGGCCCgugUAcGUGUCCg -3'
miRNA:   3'- -CGGa-GCa-UGCCCCGGGa--GUuCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 89871 0.66 0.740911
Target:  5'- cGCCUCGUagACGcgccgcucGGGCUCggCGguggggucGGCGUCCg -3'
miRNA:   3'- -CGGAGCA--UGC--------CCCGGGa-GU--------UCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 104342 0.66 0.740911
Target:  5'- cGCC-CGUcauCGGGucGCUCUUcGGCGCCg -3'
miRNA:   3'- -CGGaGCAu--GCCC--CGGGAGuUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 64954 0.66 0.731453
Target:  5'- gGCCgCGcUGCGGGcGCaggcCGAGCGCCa -3'
miRNA:   3'- -CGGaGC-AUGCCC-CGgga-GUUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 70629 0.66 0.731453
Target:  5'- uCCUCG-GCGGcgccguGGCCgCgcgCgAGGCGCCCg -3'
miRNA:   3'- cGGAGCaUGCC------CCGG-Ga--G-UUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 85151 0.66 0.731453
Target:  5'- aCCgCGUGCGGcagggggccGGCgCCgCGGGCGCCg -3'
miRNA:   3'- cGGaGCAUGCC---------CCG-GGaGUUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 129991 0.66 0.731453
Target:  5'- gGCCUCGUcguCGGGGauguCCgagacggCGcGCGCCa -3'
miRNA:   3'- -CGGAGCAu--GCCCCg---GGa------GUuCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 38658 0.66 0.7286
Target:  5'- gGCCaccgCG-ACgacgaagaggaccgGGGGCCCcggcgCAAGCGCCg -3'
miRNA:   3'- -CGGa---GCaUG--------------CCCCGGGa----GUUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 141842 0.66 0.721916
Target:  5'- cGCgCUCGacgcgaGGGGCUCgcgccGCGCCCu -3'
miRNA:   3'- -CG-GAGCaug---CCCCGGGaguu-CGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 85084 0.66 0.721916
Target:  5'- cGCCU-GUACGuGGGCaaccggcacuaCUCG-GCGCUCg -3'
miRNA:   3'- -CGGAgCAUGC-CCCGg----------GAGUuCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 65920 0.66 0.721916
Target:  5'- uCCUCGU-CGGGcGCCC-CGccGCcgGCCCa -3'
miRNA:   3'- cGGAGCAuGCCC-CGGGaGUu-CG--CGGG- -5'
29399 5' -60.5 NC_006151.1 + 55077 0.66 0.721916
Target:  5'- gGgCUCGgccGCGGcGCgCCUCGuGCGCCUc -3'
miRNA:   3'- -CgGAGCa--UGCCcCG-GGAGUuCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.