Results 1 - 20 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2940 | 5' | -53.8 | NC_001493.1 | + | 42756 | 0.65 | 0.96484 |
Target: 5'- cCGCCGUGAAgccacaaccgAUCGCCACcaggaagcgaucggGGUuaucGGCGCu -3' miRNA: 3'- -GUGGCGCUUa---------UAGUGGUG--------------CCG----CUGCG- -5' |
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2940 | 5' | -53.8 | NC_001493.1 | + | 84201 | 0.65 | 0.964507 |
Target: 5'- aACCGCGGcuacucuaagaugaAUAUCgggauuucaaggaGCC-CGGUGGCGUu -3' miRNA: 3'- gUGGCGCU--------------UAUAG-------------UGGuGCCGCUGCG- -5' |
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2940 | 5' | -53.8 | NC_001493.1 | + | 10876 | 0.66 | 0.95888 |
Target: 5'- aGCCGcCGAGUuugucgCACC-CGGgGAgGCc -3' miRNA: 3'- gUGGC-GCUUAua----GUGGuGCCgCUgCG- -5' |
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2940 | 5' | -53.8 | NC_001493.1 | + | 60453 | 0.66 | 0.963835 |
Target: 5'- -uCCGCGGAa--UACCGCGGgcgcgauccccagucUGACGCg -3' miRNA: 3'- guGGCGCUUauaGUGGUGCC---------------GCUGCG- -5' |
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2940 | 5' | -53.8 | NC_001493.1 | + | 9118 | 0.66 | 0.95888 |
Target: 5'- aGCCGCGGG-GUCAUCcCcGCGACcGCg -3' miRNA: 3'- gUGGCGCUUaUAGUGGuGcCGCUG-CG- -5' |
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2940 | 5' | -53.8 | NC_001493.1 | + | 24070 | 0.66 | 0.951022 |
Target: 5'- gGCCGUGAGUcacacacuccuGUuaCACCACggggggcuGGCGAUGUg -3' miRNA: 3'- gUGGCGCUUA-----------UA--GUGGUG--------CCGCUGCG- -5' |
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2940 | 5' | -53.8 | NC_001493.1 | + | 91269 | 0.66 | 0.962464 |
Target: 5'- -cCCGCGAuucuuUCACCAUGGau-UGCa -3' miRNA: 3'- guGGCGCUuau--AGUGGUGCCgcuGCG- -5' |
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2940 | 5' | -53.8 | NC_001493.1 | + | 111757 | 0.66 | 0.95662 |
Target: 5'- aCACC-CGug-AUCACCACgGGCGGucccgauccagaauuCGCa -3' miRNA: 3'- -GUGGcGCuuaUAGUGGUG-CCGCU---------------GCG- -5' |
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2940 | 5' | -53.8 | NC_001493.1 | + | 63945 | 0.66 | 0.962464 |
Target: 5'- -cCCGCGGGcGUCGCC--GGUGugGUc -3' miRNA: 3'- guGGCGCUUaUAGUGGugCCGCugCG- -5' |
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2940 | 5' | -53.8 | NC_001493.1 | + | 124673 | 0.66 | 0.95888 |
Target: 5'- aGCCGCGGG-GUCAUCcCcGCGACcGCg -3' miRNA: 3'- gUGGCGCUUaUAGUGGuGcCGCUG-CG- -5' |
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2940 | 5' | -53.8 | NC_001493.1 | + | 49224 | 0.66 | 0.951022 |
Target: 5'- gCACCGCGuucaguUGUUgggccaACCACGGUuuGCGCc -3' miRNA: 3'- -GUGGCGCuu----AUAG------UGGUGCCGc-UGCG- -5' |
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2940 | 5' | -53.8 | NC_001493.1 | + | 48600 | 0.66 | 0.950605 |
Target: 5'- uCACUGCGAAUcgaccugaacgccGUCugAUCACGcgaucgugacGCGGCGCa -3' miRNA: 3'- -GUGGCGCUUA-------------UAG--UGGUGC----------CGCUGCG- -5' |
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2940 | 5' | -53.8 | NC_001493.1 | + | 26614 | 0.66 | 0.946741 |
Target: 5'- uCACCgGUGAccGUGUCAUCACGGUca-GCc -3' miRNA: 3'- -GUGG-CGCU--UAUAGUGGUGCCGcugCG- -5' |
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2940 | 5' | -53.8 | NC_001493.1 | + | 60071 | 0.66 | 0.951022 |
Target: 5'- gGCCGCGAAaccgGUgACCGugacggguUGGCGAgGUc -3' miRNA: 3'- gUGGCGCUUa---UAgUGGU--------GCCGCUgCG- -5' |
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2940 | 5' | -53.8 | NC_001493.1 | + | 85649 | 0.66 | 0.955067 |
Target: 5'- uGCCGCGGcgGUC-CCAcCGGUGuACa- -3' miRNA: 3'- gUGGCGCUuaUAGuGGU-GCCGC-UGcg -5' |
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2940 | 5' | -53.8 | NC_001493.1 | + | 123126 | 0.66 | 0.95888 |
Target: 5'- gACCGCucGGAUAgacgCACCGCGGCucucccugUGCg -3' miRNA: 3'- gUGGCG--CUUAUa---GUGGUGCCGcu------GCG- -5' |
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2940 | 5' | -53.8 | NC_001493.1 | + | 21407 | 0.66 | 0.951022 |
Target: 5'- uGCgGCGAugcggcuUCACCAgGGgCGGCGg -3' miRNA: 3'- gUGgCGCUuau----AGUGGUgCC-GCUGCg -5' |
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2940 | 5' | -53.8 | NC_001493.1 | + | 126430 | 0.66 | 0.95888 |
Target: 5'- aGCCGcCGAGUuugucgCACC-CGGgGAgGCc -3' miRNA: 3'- gUGGC-GCUUAua----GUGGuGCCgCUgCG- -5' |
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2940 | 5' | -53.8 | NC_001493.1 | + | 28744 | 0.66 | 0.955067 |
Target: 5'- gGCCGUcacGAGUucccCACuCACGGUGGCGa -3' miRNA: 3'- gUGGCG---CUUAua--GUG-GUGCCGCUGCg -5' |
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2940 | 5' | -53.8 | NC_001493.1 | + | 85918 | 0.66 | 0.946741 |
Target: 5'- cCACaauaaGaCGAuaaagcuUCACCACGGaGACGCa -3' miRNA: 3'- -GUGg----C-GCUuau----AGUGGUGCCgCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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