miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2940 5' -53.8 NC_001493.1 + 64028 1.11 0.003291
Target:  5'- aCACCGCGAAUAUCACCACGGCGACGCc -3'
miRNA:   3'- -GUGGCGCUUAUAGUGGUGCCGCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 64070 1.11 0.003291
Target:  5'- aCACCGCGAAUAUCACCACGGCGACGCc -3'
miRNA:   3'- -GUGGCGCUUAUAGUGGUGCCGCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 63986 1.11 0.003291
Target:  5'- aCACCGCGAAUAUCACCACGGCGACGCc -3'
miRNA:   3'- -GUGGCGCUUAUAGUGGUGCCGCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 63740 1.11 0.003291
Target:  5'- aCACCGCGAAUAUCACCACGGCGACGCc -3'
miRNA:   3'- -GUGGCGCUUAUAGUGGUGCCGCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 63617 1.11 0.003291
Target:  5'- aCACCGCGAAUAUCACCACGGCGACGCc -3'
miRNA:   3'- -GUGGCGCUUAUAGUGGUGCCGCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 63797 0.83 0.212459
Target:  5'- aCACCGCGAAcggCACCGCGGUGAC-Ca -3'
miRNA:   3'- -GUGGCGCUUauaGUGGUGCCGCUGcG- -5'
2940 5' -53.8 NC_001493.1 + 63944 0.83 0.223289
Target:  5'- aCACCGCGGugacCACCAcauCGGCGACGCc -3'
miRNA:   3'- -GUGGCGCUuauaGUGGU---GCCGCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 63899 0.83 0.223289
Target:  5'- aCACCGCGGugacCACCAcacCGGCGACGCc -3'
miRNA:   3'- -GUGGCGCUuauaGUGGU---GCCGCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 28321 0.78 0.400175
Target:  5'- aCGCCGCGA---UCACCGaGGCGGCGa -3'
miRNA:   3'- -GUGGCGCUuauAGUGGUgCCGCUGCg -5'
2940 5' -53.8 NC_001493.1 + 63234 0.78 0.400175
Target:  5'- aCACCGUGGugacCACCGCaccGGCGACGCc -3'
miRNA:   3'- -GUGGCGCUuauaGUGGUG---CCGCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 62988 0.78 0.400175
Target:  5'- gCACCGUGAccGUCGCgACGGCGAaGCc -3'
miRNA:   3'- -GUGGCGCUuaUAGUGgUGCCGCUgCG- -5'
2940 5' -53.8 NC_001493.1 + 63189 0.77 0.434751
Target:  5'- aCACCGCGAAUGUCAcgaagcCCACGGgagcgaccgacacCGugGUg -3'
miRNA:   3'- -GUGGCGCUUAUAGU------GGUGCC-------------GCugCG- -5'
2940 5' -53.8 NC_001493.1 + 63854 0.77 0.467206
Target:  5'- aCACCGCGAAcgaCACCGuggugaccaccacacCGGCGAUGCc -3'
miRNA:   3'- -GUGGCGCUUauaGUGGU---------------GCCGCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 63698 0.76 0.471945
Target:  5'- aCACCGCGAAUGUCAcgaugcCCGCGGgagcgaccgacacCGugGUg -3'
miRNA:   3'- -GUGGCGCUUAUAGU------GGUGCC-------------GCugCG- -5'
2940 5' -53.8 NC_001493.1 + 63494 0.76 0.471945
Target:  5'- aCACCGCGAAUGUCAcgaagcCCGCGGgaucgaccgacacCGugGUg -3'
miRNA:   3'- -GUGGCGCUUAUAGU------GGUGCC-------------GCugCG- -5'
2940 5' -53.8 NC_001493.1 + 63575 0.76 0.471945
Target:  5'- aCACCGCGAAUGUCAcgaugcCCGCGGgagcgaccgacacCGugGUg -3'
miRNA:   3'- -GUGGCGCUUAUAGU------GGUGCC-------------GCugCG- -5'
2940 5' -53.8 NC_001493.1 + 63413 0.76 0.511667
Target:  5'- aCACCGUGGugacCACCAcacCGGCGAUGCc -3'
miRNA:   3'- -GUGGCGCUuauaGUGGU---GCCGCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 66051 0.76 0.518589
Target:  5'- cCACgGCGuugucuuaugaggcGGUAUCugCACGGCGAcCGCc -3'
miRNA:   3'- -GUGgCGC--------------UUAUAGugGUGCCGCU-GCG- -5'
2940 5' -53.8 NC_001493.1 + 63369 0.75 0.541586
Target:  5'- gCACCGUGGugacCACCAcacCGGCGAUGCc -3'
miRNA:   3'- -GUGGCGCUuauaGUGGU---GCCGCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 63279 0.75 0.541586
Target:  5'- gCACCGUGGugacCACCAcacCGGCGAUGCc -3'
miRNA:   3'- -GUGGCGCUuauaGUGGU---GCCGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.