miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2940 5' -53.8 NC_001493.1 + 1154 0.71 0.77868
Target:  5'- uCACCGCGGugcccgcuuCCGCGGaGACGCu -3'
miRNA:   3'- -GUGGCGCUuauagu---GGUGCCgCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 1312 0.73 0.685637
Target:  5'- -uCCGCGGAagcgggCACCGCGGUGACu- -3'
miRNA:   3'- guGGCGCUUaua---GUGGUGCCGCUGcg -5'
2940 5' -53.8 NC_001493.1 + 3628 0.67 0.932448
Target:  5'- -cCCGCGAAUAccgguUCGCacaGgGGCG-CGCu -3'
miRNA:   3'- guGGCGCUUAU-----AGUGg--UgCCGCuGCG- -5'
2940 5' -53.8 NC_001493.1 + 7572 0.66 0.95888
Target:  5'- gACCGCucGGAUAgacgCACCGCGGCucucccugUGCg -3'
miRNA:   3'- gUGGCG--CUUAUa---GUGGUGCCGcu------GCG- -5'
2940 5' -53.8 NC_001493.1 + 8275 0.68 0.90997
Target:  5'- gCACCGaUGggUGggaGCCcCGGCGcgGCGCc -3'
miRNA:   3'- -GUGGC-GCuuAUag-UGGuGCCGC--UGCG- -5'
2940 5' -53.8 NC_001493.1 + 9118 0.66 0.95888
Target:  5'- aGCCGCGGG-GUCAUCcCcGCGACcGCg -3'
miRNA:   3'- gUGGCGCUUaUAGUGGuGcCGCUG-CG- -5'
2940 5' -53.8 NC_001493.1 + 9796 0.67 0.937456
Target:  5'- aACCGCGGGgacGUCGagcuCGGCGcggGCGCa -3'
miRNA:   3'- gUGGCGCUUa--UAGUggu-GCCGC---UGCG- -5'
2940 5' -53.8 NC_001493.1 + 10713 0.68 0.90997
Target:  5'- gGCCGCGGucaccgAUCGCCgaaauACaGCGugGUa -3'
miRNA:   3'- gUGGCGCUua----UAGUGG-----UGcCGCugCG- -5'
2940 5' -53.8 NC_001493.1 + 10876 0.66 0.95888
Target:  5'- aGCCGcCGAGUuugucgCACC-CGGgGAgGCc -3'
miRNA:   3'- gUGGC-GCUUAua----GUGGuGCCgCUgCG- -5'
2940 5' -53.8 NC_001493.1 + 12667 0.7 0.811595
Target:  5'- gCGCCGCGAGUAUC-CCGa-GCgccccgaccccgGACGCg -3'
miRNA:   3'- -GUGGCGCUUAUAGuGGUgcCG------------CUGCG- -5'
2940 5' -53.8 NC_001493.1 + 12964 0.67 0.942219
Target:  5'- cCGCCGcCGA--GUCGCCAuCGGUucGGuCGCg -3'
miRNA:   3'- -GUGGC-GCUuaUAGUGGU-GCCG--CU-GCG- -5'
2940 5' -53.8 NC_001493.1 + 13186 0.66 0.95888
Target:  5'- aCACCaGgGAG-GUCACCACGaGC-AUGCa -3'
miRNA:   3'- -GUGG-CgCUUaUAGUGGUGC-CGcUGCG- -5'
2940 5' -53.8 NC_001493.1 + 13409 0.67 0.932448
Target:  5'- gGCCGCGcg-GUCGuggggcCCACGGUGAgGg -3'
miRNA:   3'- gUGGCGCuuaUAGU------GGUGCCGCUgCg -5'
2940 5' -53.8 NC_001493.1 + 15012 0.73 0.685637
Target:  5'- gGCCGCGggUggaaagGUCGCCGuCGGCGGg-- -3'
miRNA:   3'- gUGGCGCuuA------UAGUGGU-GCCGCUgcg -5'
2940 5' -53.8 NC_001493.1 + 15891 0.69 0.845616
Target:  5'- gACCGgGA---UCAgCGCGGUGAuCGCg -3'
miRNA:   3'- gUGGCgCUuauAGUgGUGCCGCU-GCG- -5'
2940 5' -53.8 NC_001493.1 + 16666 0.71 0.745985
Target:  5'- uCACCGgGggUugUGCCACGG-GugGCg -3'
miRNA:   3'- -GUGGCgCuuAuaGUGGUGCCgCugCG- -5'
2940 5' -53.8 NC_001493.1 + 21407 0.66 0.951022
Target:  5'- uGCgGCGAugcggcuUCACCAgGGgCGGCGg -3'
miRNA:   3'- gUGgCGCUuau----AGUGGUgCC-GCUGCg -5'
2940 5' -53.8 NC_001493.1 + 24070 0.66 0.951022
Target:  5'- gGCCGUGAGUcacacacuccuGUuaCACCACggggggcuGGCGAUGUg -3'
miRNA:   3'- gUGGCGCUUA-----------UA--GUGGUG--------CCGCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 24390 0.66 0.955067
Target:  5'- -uUCGgGAcucaggGUCGCCAaccacuCGGUGACGCg -3'
miRNA:   3'- guGGCgCUua----UAGUGGU------GCCGCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 24701 0.68 0.915956
Target:  5'- gGCCGUGAc---CGCUACGGUGcCGUg -3'
miRNA:   3'- gUGGCGCUuauaGUGGUGCCGCuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.