miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2940 5' -53.8 NC_001493.1 + 116709 0.71 0.77868
Target:  5'- uCACCGCGGugcccgcuuCCGCGGaGACGCu -3'
miRNA:   3'- -GUGGCGCUuauagu---GGUGCCgCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 63164 0.71 0.765385
Target:  5'- uCGCCgGUGuggugGUCACCACGGUGucgguCGCu -3'
miRNA:   3'- -GUGG-CGCuua--UAGUGGUGCCGCu----GCG- -5'
2940 5' -53.8 NC_001493.1 + 63209 0.71 0.765385
Target:  5'- uCGCCgGUGuggugGUCACCACGGUGucgguCGCu -3'
miRNA:   3'- -GUGG-CGCuua--UAGUGGUGCCGCu----GCG- -5'
2940 5' -53.8 NC_001493.1 + 63254 0.71 0.765385
Target:  5'- uCGCCgGUGuggugGUCACCACGGUGucgguCGCu -3'
miRNA:   3'- -GUGG-CGCuua--UAGUGGUGCCGCu----GCG- -5'
2940 5' -53.8 NC_001493.1 + 63380 0.71 0.765385
Target:  5'- uCGCCgGUGuggugGUCACCACGGUGucgguCGCu -3'
miRNA:   3'- -GUGG-CGCuua--UAGUGGUGCCGCu----GCG- -5'
2940 5' -53.8 NC_001493.1 + 63503 0.71 0.765385
Target:  5'- uCGCCgGUGuggugGUCACCACGGUGucgguCGCu -3'
miRNA:   3'- -GUGG-CGCuua--UAGUGGUGCCGCu----GCG- -5'
2940 5' -53.8 NC_001493.1 + 63755 0.71 0.773961
Target:  5'- uCACCGCG-GUGUCGuuggcucCCGCGgGCGuCGCc -3'
miRNA:   3'- -GUGGCGCuUAUAGU-------GGUGC-CGCuGCG- -5'
2940 5' -53.8 NC_001493.1 + 86983 0.71 0.774907
Target:  5'- gUACCGCcguUAUcCGCCACuGGUGGCGUg -3'
miRNA:   3'- -GUGGCGcuuAUA-GUGGUG-CCGCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 1154 0.71 0.77868
Target:  5'- uCACCGCGGugcccgcuuCCGCGGaGACGCu -3'
miRNA:   3'- -GUGGCGCUuauagu---GGUGCCgCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 57184 0.71 0.755741
Target:  5'- uCACCGCGGug--CACC-CGGUGAgGUu -3'
miRNA:   3'- -GUGGCGCUuauaGUGGuGCCGCUgCG- -5'
2940 5' -53.8 NC_001493.1 + 63903 0.71 0.745985
Target:  5'- -cCCGCGGGcGUCGCCGUGGUGAuauuCGCg -3'
miRNA:   3'- guGGCGCUUaUAGUGGUGCCGCU----GCG- -5'
2940 5' -53.8 NC_001493.1 + 63820 0.71 0.745985
Target:  5'- -cCCGCGGGcGUCGCCGUGGUGAuauuCGCg -3'
miRNA:   3'- guGGCGCUUaUAGUGGUGCCGCU----GCG- -5'
2940 5' -53.8 NC_001493.1 + 106330 0.74 0.602935
Target:  5'- uCACCGCGGAgucggcggcCGCCAUGGCG-UGCc -3'
miRNA:   3'- -GUGGCGCUUaua------GUGGUGCCGCuGCG- -5'
2940 5' -53.8 NC_001493.1 + 63074 0.74 0.613279
Target:  5'- uCGCCgguGCGGugGUCACCACGGUGuCGUu -3'
miRNA:   3'- -GUGG---CGCUuaUAGUGGUGCCGCuGCG- -5'
2940 5' -53.8 NC_001493.1 + 15012 0.73 0.685637
Target:  5'- gGCCGCGggUggaaagGUCGCCGuCGGCGGg-- -3'
miRNA:   3'- gUGGCGCuuA------UAGUGGU-GCCGCUgcg -5'
2940 5' -53.8 NC_001493.1 + 130567 0.73 0.685637
Target:  5'- gGCCGCGggUggaaagGUCGCCGuCGGCGGg-- -3'
miRNA:   3'- gUGGCGCuuA------UAGUGGU-GCCGCUgcg -5'
2940 5' -53.8 NC_001493.1 + 63683 0.72 0.716142
Target:  5'- uCGCCgGUGuggugGUCACCACGGUGucguuCGCg -3'
miRNA:   3'- -GUGG-CGCuua--UAGUGGUGCCGCu----GCG- -5'
2940 5' -53.8 NC_001493.1 + 108754 0.72 0.716142
Target:  5'- cCACCGCGuugcUCACgACGcggacaGCGGCGCg -3'
miRNA:   3'- -GUGGCGCuuauAGUGgUGC------CGCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 89629 0.71 0.745985
Target:  5'- gACCGaaca-GUCGCgCACGGCGGCGUu -3'
miRNA:   3'- gUGGCgcuuaUAGUG-GUGCCGCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 63451 0.71 0.745985
Target:  5'- -cCCGCGGGcGUCGCCGUGGUGAuauuCGCg -3'
miRNA:   3'- guGGCGCUUaUAGUGGUGCCGCU----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.