Results 1 - 20 of 234 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29400 | 3' | -66.3 | NC_006151.1 | + | 17574 | 0.66 | 0.489119 |
Target: 5'- ---aGGCGGggauGCGCCCGGACCcguCCa-- -3' miRNA: 3'- accaCCGCC----CGCGGGCCUGGu--GGccc -5' |
|||||||
29400 | 3' | -66.3 | NC_006151.1 | + | 14641 | 0.66 | 0.489119 |
Target: 5'- cGG-GGCGGccGgGCUCGGGuCCGguuCCGGGu -3' miRNA: 3'- aCCaCCGCC--CgCGGGCCU-GGU---GGCCC- -5' |
|||||||
29400 | 3' | -66.3 | NC_006151.1 | + | 2702 | 0.66 | 0.489119 |
Target: 5'- gGGUgcaGGCGGGCGaa-GGAggccuCCACgCGGGc -3' miRNA: 3'- aCCA---CCGCCCGCgggCCU-----GGUG-GCCC- -5' |
|||||||
29400 | 3' | -66.3 | NC_006151.1 | + | 137740 | 0.66 | 0.489119 |
Target: 5'- cGGUGGCcGGCGCCgacaCGGuCCG-CGGc -3' miRNA: 3'- aCCACCGcCCGCGG----GCCuGGUgGCCc -5' |
|||||||
29400 | 3' | -66.3 | NC_006151.1 | + | 104901 | 0.66 | 0.489119 |
Target: 5'- gUGGUGGaCGcGGCggcgGCgCGcGACCGCgaCGGGg -3' miRNA: 3'- -ACCACC-GC-CCG----CGgGC-CUGGUG--GCCC- -5' |
|||||||
29400 | 3' | -66.3 | NC_006151.1 | + | 85073 | 0.66 | 0.489119 |
Target: 5'- aGGccuGCGGGCGCCUguacguGGGCaACCGGc -3' miRNA: 3'- aCCac-CGCCCGCGGG------CCUGgUGGCCc -5' |
|||||||
29400 | 3' | -66.3 | NC_006151.1 | + | 73042 | 0.66 | 0.489119 |
Target: 5'- cGGUGGCGcGGUGgg-GGugCGCgGGGu -3' miRNA: 3'- aCCACCGC-CCGCgggCCugGUGgCCC- -5' |
|||||||
29400 | 3' | -66.3 | NC_006151.1 | + | 19027 | 0.66 | 0.489119 |
Target: 5'- ---cGGCGaGGUgaagcugcacGCCgGGuCCACCGGGc -3' miRNA: 3'- accaCCGC-CCG----------CGGgCCuGGUGGCCC- -5' |
|||||||
29400 | 3' | -66.3 | NC_006151.1 | + | 86906 | 0.66 | 0.489119 |
Target: 5'- cUGGUGGUcaaccaGCGCCCGGcGCCcaGCCuGGa -3' miRNA: 3'- -ACCACCGcc----CGCGGGCC-UGG--UGGcCC- -5' |
|||||||
29400 | 3' | -66.3 | NC_006151.1 | + | 22067 | 0.66 | 0.489119 |
Target: 5'- cGGUaccaGGCcacguGGGCGCgguacgUGGGCCGCCGGu -3' miRNA: 3'- aCCA----CCG-----CCCGCGg-----GCCUGGUGGCCc -5' |
|||||||
29400 | 3' | -66.3 | NC_006151.1 | + | 93572 | 0.66 | 0.488233 |
Target: 5'- cGGgGGCGGGCGCgCCaaagagcGGGCUcgcGCCGa- -3' miRNA: 3'- aCCaCCGCCCGCG-GG-------CCUGG---UGGCcc -5' |
|||||||
29400 | 3' | -66.3 | NC_006151.1 | + | 89556 | 0.66 | 0.483816 |
Target: 5'- cGGUGGaggccgcgaggcugaUGGGCacGCCCauGGGCuCGCCGGcGg -3' miRNA: 3'- aCCACC---------------GCCCG--CGGG--CCUG-GUGGCC-C- -5' |
|||||||
29400 | 3' | -66.3 | NC_006151.1 | + | 117250 | 0.66 | 0.480295 |
Target: 5'- ---cGGCGGGCccgagGCgCGGGCCGCgCGcGGc -3' miRNA: 3'- accaCCGCCCG-----CGgGCCUGGUG-GC-CC- -5' |
|||||||
29400 | 3' | -66.3 | NC_006151.1 | + | 74863 | 0.66 | 0.480295 |
Target: 5'- cGGaaGGCGccGCGCaCCGcGGCCACCGuGGc -3' miRNA: 3'- aCCa-CCGCc-CGCG-GGC-CUGGUGGC-CC- -5' |
|||||||
29400 | 3' | -66.3 | NC_006151.1 | + | 106364 | 0.66 | 0.480295 |
Target: 5'- cUGGacGCGGGCGCgCGc-CCGCCGcGGc -3' miRNA: 3'- -ACCacCGCCCGCGgGCcuGGUGGC-CC- -5' |
|||||||
29400 | 3' | -66.3 | NC_006151.1 | + | 64212 | 0.66 | 0.480295 |
Target: 5'- aGGUccGGCguGGGCGCCUcggcguacaGGGCCGCgacggcggcgCGGGc -3' miRNA: 3'- aCCA--CCG--CCCGCGGG---------CCUGGUG----------GCCC- -5' |
|||||||
29400 | 3' | -66.3 | NC_006151.1 | + | 8578 | 0.66 | 0.480295 |
Target: 5'- gGGUgGGUGGGUGUgagggCCGGugCGaguaUGGGg -3' miRNA: 3'- aCCA-CCGCCCGCG-----GGCCugGUg---GCCC- -5' |
|||||||
29400 | 3' | -66.3 | NC_006151.1 | + | 134982 | 0.66 | 0.479417 |
Target: 5'- cGGgccuucucgGGCGGGCGCgucuuggCgGGGgCGCgGGGg -3' miRNA: 3'- aCCa--------CCGCCCGCG-------GgCCUgGUGgCCC- -5' |
|||||||
29400 | 3' | -66.3 | NC_006151.1 | + | 58845 | 0.66 | 0.479417 |
Target: 5'- aGGUGcgccagcGCGuGGagcuCGCCCGG-CgCGCCGGGu -3' miRNA: 3'- aCCAC-------CGC-CC----GCGGGCCuG-GUGGCCC- -5' |
|||||||
29400 | 3' | -66.3 | NC_006151.1 | + | 17830 | 0.66 | 0.477663 |
Target: 5'- cGG-GGCGGGCGgCCaccACCcgcucgcuacacguGCCGGGc -3' miRNA: 3'- aCCaCCGCCCGCgGGcc-UGG--------------UGGCCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home