miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29400 3' -66.3 NC_006151.1 + 17574 0.66 0.489119
Target:  5'- ---aGGCGGggauGCGCCCGGACCcguCCa-- -3'
miRNA:   3'- accaCCGCC----CGCGGGCCUGGu--GGccc -5'
29400 3' -66.3 NC_006151.1 + 14641 0.66 0.489119
Target:  5'- cGG-GGCGGccGgGCUCGGGuCCGguuCCGGGu -3'
miRNA:   3'- aCCaCCGCC--CgCGGGCCU-GGU---GGCCC- -5'
29400 3' -66.3 NC_006151.1 + 2702 0.66 0.489119
Target:  5'- gGGUgcaGGCGGGCGaa-GGAggccuCCACgCGGGc -3'
miRNA:   3'- aCCA---CCGCCCGCgggCCU-----GGUG-GCCC- -5'
29400 3' -66.3 NC_006151.1 + 137740 0.66 0.489119
Target:  5'- cGGUGGCcGGCGCCgacaCGGuCCG-CGGc -3'
miRNA:   3'- aCCACCGcCCGCGG----GCCuGGUgGCCc -5'
29400 3' -66.3 NC_006151.1 + 104901 0.66 0.489119
Target:  5'- gUGGUGGaCGcGGCggcgGCgCGcGACCGCgaCGGGg -3'
miRNA:   3'- -ACCACC-GC-CCG----CGgGC-CUGGUG--GCCC- -5'
29400 3' -66.3 NC_006151.1 + 85073 0.66 0.489119
Target:  5'- aGGccuGCGGGCGCCUguacguGGGCaACCGGc -3'
miRNA:   3'- aCCac-CGCCCGCGGG------CCUGgUGGCCc -5'
29400 3' -66.3 NC_006151.1 + 73042 0.66 0.489119
Target:  5'- cGGUGGCGcGGUGgg-GGugCGCgGGGu -3'
miRNA:   3'- aCCACCGC-CCGCgggCCugGUGgCCC- -5'
29400 3' -66.3 NC_006151.1 + 19027 0.66 0.489119
Target:  5'- ---cGGCGaGGUgaagcugcacGCCgGGuCCACCGGGc -3'
miRNA:   3'- accaCCGC-CCG----------CGGgCCuGGUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 86906 0.66 0.489119
Target:  5'- cUGGUGGUcaaccaGCGCCCGGcGCCcaGCCuGGa -3'
miRNA:   3'- -ACCACCGcc----CGCGGGCC-UGG--UGGcCC- -5'
29400 3' -66.3 NC_006151.1 + 22067 0.66 0.489119
Target:  5'- cGGUaccaGGCcacguGGGCGCgguacgUGGGCCGCCGGu -3'
miRNA:   3'- aCCA----CCG-----CCCGCGg-----GCCUGGUGGCCc -5'
29400 3' -66.3 NC_006151.1 + 93572 0.66 0.488233
Target:  5'- cGGgGGCGGGCGCgCCaaagagcGGGCUcgcGCCGa- -3'
miRNA:   3'- aCCaCCGCCCGCG-GG-------CCUGG---UGGCcc -5'
29400 3' -66.3 NC_006151.1 + 89556 0.66 0.483816
Target:  5'- cGGUGGaggccgcgaggcugaUGGGCacGCCCauGGGCuCGCCGGcGg -3'
miRNA:   3'- aCCACC---------------GCCCG--CGGG--CCUG-GUGGCC-C- -5'
29400 3' -66.3 NC_006151.1 + 117250 0.66 0.480295
Target:  5'- ---cGGCGGGCccgagGCgCGGGCCGCgCGcGGc -3'
miRNA:   3'- accaCCGCCCG-----CGgGCCUGGUG-GC-CC- -5'
29400 3' -66.3 NC_006151.1 + 74863 0.66 0.480295
Target:  5'- cGGaaGGCGccGCGCaCCGcGGCCACCGuGGc -3'
miRNA:   3'- aCCa-CCGCc-CGCG-GGC-CUGGUGGC-CC- -5'
29400 3' -66.3 NC_006151.1 + 106364 0.66 0.480295
Target:  5'- cUGGacGCGGGCGCgCGc-CCGCCGcGGc -3'
miRNA:   3'- -ACCacCGCCCGCGgGCcuGGUGGC-CC- -5'
29400 3' -66.3 NC_006151.1 + 64212 0.66 0.480295
Target:  5'- aGGUccGGCguGGGCGCCUcggcguacaGGGCCGCgacggcggcgCGGGc -3'
miRNA:   3'- aCCA--CCG--CCCGCGGG---------CCUGGUG----------GCCC- -5'
29400 3' -66.3 NC_006151.1 + 8578 0.66 0.480295
Target:  5'- gGGUgGGUGGGUGUgagggCCGGugCGaguaUGGGg -3'
miRNA:   3'- aCCA-CCGCCCGCG-----GGCCugGUg---GCCC- -5'
29400 3' -66.3 NC_006151.1 + 134982 0.66 0.479417
Target:  5'- cGGgccuucucgGGCGGGCGCgucuuggCgGGGgCGCgGGGg -3'
miRNA:   3'- aCCa--------CCGCCCGCG-------GgCCUgGUGgCCC- -5'
29400 3' -66.3 NC_006151.1 + 58845 0.66 0.479417
Target:  5'- aGGUGcgccagcGCGuGGagcuCGCCCGG-CgCGCCGGGu -3'
miRNA:   3'- aCCAC-------CGC-CC----GCGGGCCuG-GUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 17830 0.66 0.477663
Target:  5'- cGG-GGCGGGCGgCCaccACCcgcucgcuacacguGCCGGGc -3'
miRNA:   3'- aCCaCCGCCCGCgGGcc-UGG--------------UGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.