miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29401 3' -61.1 NC_006151.1 + 136897 0.66 0.728661
Target:  5'- cCCCACGgcugggUGCGCGCCcccgacgaggaGCaGCaGCagCCGGg -3'
miRNA:   3'- -GGGUGC------ACGUGCGG-----------CG-CGaCGa-GGCC- -5'
29401 3' -61.1 NC_006151.1 + 106418 0.66 0.728661
Target:  5'- uUCACGcUGCGCGUCGCcGaCUGgaCCGa -3'
miRNA:   3'- gGGUGC-ACGUGCGGCG-C-GACgaGGCc -5'
29401 3' -61.1 NC_006151.1 + 52966 0.66 0.728661
Target:  5'- -gCGCGUGCAgGCggcucauguaCGCGCUGacCUCgCGGu -3'
miRNA:   3'- ggGUGCACGUgCG----------GCGCGAC--GAG-GCC- -5'
29401 3' -61.1 NC_006151.1 + 65816 0.66 0.728661
Target:  5'- gCCGCGguggaugggcgGcCGCGCCaGCGCgGC-CCGGc -3'
miRNA:   3'- gGGUGCa----------C-GUGCGG-CGCGaCGaGGCC- -5'
29401 3' -61.1 NC_006151.1 + 90982 0.66 0.728661
Target:  5'- gCCCugGcgccGCugGCUgGCGC-GCUCCa- -3'
miRNA:   3'- -GGGugCa---CGugCGG-CGCGaCGAGGcc -5'
29401 3' -61.1 NC_006151.1 + 55964 0.66 0.728661
Target:  5'- uCCCGCG-GCugGUgugcgaggUGCGCgaggUGC-CCGGg -3'
miRNA:   3'- -GGGUGCaCGugCG--------GCGCG----ACGaGGCC- -5'
29401 3' -61.1 NC_006151.1 + 78746 0.66 0.728661
Target:  5'- gCCCACGUccGCcgucuGCGCCGagGCggcGCUCCu- -3'
miRNA:   3'- -GGGUGCA--CG-----UGCGGCg-CGa--CGAGGcc -5'
29401 3' -61.1 NC_006151.1 + 120855 0.66 0.728661
Target:  5'- gCCACGUaCACGuCCaGCcacCUGCUCCGc -3'
miRNA:   3'- gGGUGCAcGUGC-GG-CGc--GACGAGGCc -5'
29401 3' -61.1 NC_006151.1 + 122490 0.66 0.728661
Target:  5'- -aCGCGggcgagacgGCGCGCCgGCGCgcggacgcGCUCCuGGa -3'
miRNA:   3'- ggGUGCa--------CGUGCGG-CGCGa-------CGAGG-CC- -5'
29401 3' -61.1 NC_006151.1 + 126392 0.66 0.728661
Target:  5'- gCCCGCGcUGCugGCCa-GCcGCgUCGGg -3'
miRNA:   3'- -GGGUGC-ACGugCGGcgCGaCGaGGCC- -5'
29401 3' -61.1 NC_006151.1 + 8250 0.66 0.728661
Target:  5'- gCCGgGccgGCGCGCCGggaCGCccCUCCGGg -3'
miRNA:   3'- gGGUgCa--CGUGCGGC---GCGacGAGGCC- -5'
29401 3' -61.1 NC_006151.1 + 32244 0.66 0.728661
Target:  5'- gCCGCG-GCGacCGCCGcCGCcGCUCuCGa -3'
miRNA:   3'- gGGUGCaCGU--GCGGC-GCGaCGAG-GCc -5'
29401 3' -61.1 NC_006151.1 + 119733 0.66 0.719198
Target:  5'- -aCACGUacCGCGCCGcCGUggaccgGCUCUGGc -3'
miRNA:   3'- ggGUGCAc-GUGCGGC-GCGa-----CGAGGCC- -5'
29401 3' -61.1 NC_006151.1 + 138978 0.66 0.719198
Target:  5'- gCUCGCGa-CGCGCCGCGCcGCgcucagCCGc -3'
miRNA:   3'- -GGGUGCacGUGCGGCGCGaCGa-----GGCc -5'
29401 3' -61.1 NC_006151.1 + 55190 0.66 0.719198
Target:  5'- uCCUggacaGCGUGgaCACGUCGCaGCcggGCUUCGGg -3'
miRNA:   3'- -GGG-----UGCAC--GUGCGGCG-CGa--CGAGGCC- -5'
29401 3' -61.1 NC_006151.1 + 82138 0.66 0.719198
Target:  5'- gCCCGCGgGCGgGcCCG-GCgGCUCCaGGu -3'
miRNA:   3'- -GGGUGCaCGUgC-GGCgCGaCGAGG-CC- -5'
29401 3' -61.1 NC_006151.1 + 99522 0.66 0.719198
Target:  5'- gCCAC-UGCaugGCGCCGCGCccGCcCaCGGa -3'
miRNA:   3'- gGGUGcACG---UGCGGCGCGa-CGaG-GCC- -5'
29401 3' -61.1 NC_006151.1 + 104061 0.66 0.719198
Target:  5'- gCgCGCG-GCcgACGCgGCGCUGCgCCGc -3'
miRNA:   3'- -GgGUGCaCG--UGCGgCGCGACGaGGCc -5'
29401 3' -61.1 NC_006151.1 + 104862 0.66 0.719198
Target:  5'- gCCGCGgcgacggaGCGCGCCacGCGCcUGCUgCGc -3'
miRNA:   3'- gGGUGCa-------CGUGCGG--CGCG-ACGAgGCc -5'
29401 3' -61.1 NC_006151.1 + 49260 0.66 0.719198
Target:  5'- gCU-CGUGCGCGCCGUcguccaGCgGCUCUGc -3'
miRNA:   3'- gGGuGCACGUGCGGCG------CGaCGAGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.