miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29401 5' -53.1 NC_006151.1 + 135119 0.66 0.970996
Target:  5'- aGCgCGCGGgGCGGgcUGGGCggGGACg- -3'
miRNA:   3'- gUG-GCGCCgCGCU--ACUUGaaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 106337 0.66 0.970996
Target:  5'- gACCGCgcgcuGGaCGCGGUGGACacgcUGGACg- -3'
miRNA:   3'- gUGGCG-----CC-GCGCUACUUGa---ACUUGag -5'
29401 5' -53.1 NC_006151.1 + 91146 0.66 0.970996
Target:  5'- nCACCugGgGGCGCGA-GAGCgucaGGCUCa -3'
miRNA:   3'- -GUGG--CgCCGCGCUaCUUGaac-UUGAG- -5'
29401 5' -53.1 NC_006151.1 + 81566 0.66 0.970996
Target:  5'- gGCCGUGGUGCG--GAGCagGGuCUCg -3'
miRNA:   3'- gUGGCGCCGCGCuaCUUGaaCUuGAG- -5'
29401 5' -53.1 NC_006151.1 + 92208 0.66 0.970996
Target:  5'- cCGCCGCGGcCGCGcugGAGCacGAuGCUg -3'
miRNA:   3'- -GUGGCGCC-GCGCua-CUUGaaCU-UGAg -5'
29401 5' -53.1 NC_006151.1 + 102505 0.66 0.967956
Target:  5'- aCGCCGCGGCGCG--GGACcccGGCg- -3'
miRNA:   3'- -GUGGCGCCGCGCuaCUUGaacUUGag -5'
29401 5' -53.1 NC_006151.1 + 97743 0.66 0.967956
Target:  5'- aGCgCGCGGUGCGG-GAACacgUG-GCUCc -3'
miRNA:   3'- gUG-GCGCCGCGCUaCUUGa--ACuUGAG- -5'
29401 5' -53.1 NC_006151.1 + 3448 0.66 0.967956
Target:  5'- cCGCCGUcgGGCGCGggGuGCUcGGGCa- -3'
miRNA:   3'- -GUGGCG--CCGCGCuaCuUGAaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 119092 0.66 0.967956
Target:  5'- gGCCGCGGCGCucgGcGCguacgUGAGC-Cg -3'
miRNA:   3'- gUGGCGCCGCGcuaCuUGa----ACUUGaG- -5'
29401 5' -53.1 NC_006151.1 + 123263 0.66 0.967956
Target:  5'- cCGCCGCGcGCGCGGgcaccgucgUGGAC--GAGCg- -3'
miRNA:   3'- -GUGGCGC-CGCGCU---------ACUUGaaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 129499 0.66 0.967956
Target:  5'- gCAgCGCgGGCGCGAUGAcgagccGCUUGccgccGACg- -3'
miRNA:   3'- -GUgGCG-CCGCGCUACU------UGAAC-----UUGag -5'
29401 5' -53.1 NC_006151.1 + 138627 0.66 0.967956
Target:  5'- aCGCCGCcgggGGCGCGccGGACUggGAGgccUUCa -3'
miRNA:   3'- -GUGGCG----CCGCGCuaCUUGAa-CUU---GAG- -5'
29401 5' -53.1 NC_006151.1 + 5545 0.66 0.967956
Target:  5'- cCGCCucGCGGCgGCGGgcucgucGAGCagGGGCUCg -3'
miRNA:   3'- -GUGG--CGCCG-CGCUa------CUUGaaCUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 64531 0.66 0.966027
Target:  5'- cCGCCGCGGcCGCGucggGGGCggcGAggccguggcgcgccaGCUCg -3'
miRNA:   3'- -GUGGCGCC-GCGCua--CUUGaa-CU---------------UGAG- -5'
29401 5' -53.1 NC_006151.1 + 100898 0.66 0.966027
Target:  5'- gCGCCGCGGCGCGcgcgcgcccgacgacGcGAGCgcGGGCg- -3'
miRNA:   3'- -GUGGCGCCGCGC---------------UaCUUGaaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 90436 0.66 0.964696
Target:  5'- aCGCCcauCaGCGUGAUGcAGCgggUGGACUCg -3'
miRNA:   3'- -GUGGc--GcCGCGCUAC-UUGa--ACUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 128830 0.66 0.964358
Target:  5'- --aCGCGGCGCucUGGgccuuguGCUUGAACg- -3'
miRNA:   3'- gugGCGCCGCGcuACU-------UGAACUUGag -5'
29401 5' -53.1 NC_006151.1 + 82616 0.66 0.96121
Target:  5'- cCGCgCGCGGgcgcCGCGGUGGGCgcgGGACc- -3'
miRNA:   3'- -GUG-GCGCC----GCGCUACUUGaa-CUUGag -5'
29401 5' -53.1 NC_006151.1 + 122217 0.66 0.96121
Target:  5'- aGCCGU-GCGCGGUGuGCUUcgagGAGCUg -3'
miRNA:   3'- gUGGCGcCGCGCUACuUGAA----CUUGAg -5'
29401 5' -53.1 NC_006151.1 + 19423 0.66 0.96121
Target:  5'- cCACCGCuccggGGUGaCGAUGGGCg---GCUCg -3'
miRNA:   3'- -GUGGCG-----CCGC-GCUACUUGaacuUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.