Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 2358 | 0.68 | 0.918973 |
Target: 5'- gCGCCGCGGCGCaGAaGGcGCgc-AACUCg -3' miRNA: 3'- -GUGGCGCCGCG-CUaCU-UGaacUUGAG- -5' |
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29401 | 5' | -53.1 | NC_006151.1 | + | 3112 | 0.71 | 0.767879 |
Target: 5'- cCGCCGCGGCGCGGgucccaggccGGGCgcgGGGCg- -3' miRNA: 3'- -GUGGCGCCGCGCUa---------CUUGaa-CUUGag -5' |
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29401 | 5' | -53.1 | NC_006151.1 | + | 3265 | 0.67 | 0.930102 |
Target: 5'- gCGCCGCGGCGCGcgGcgauguGCgccaGGGCg- -3' miRNA: 3'- -GUGGCGCCGCGCuaCu-----UGaa--CUUGag -5' |
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29401 | 5' | -53.1 | NC_006151.1 | + | 3448 | 0.66 | 0.967956 |
Target: 5'- cCGCCGUcgGGCGCGggGuGCUcGGGCa- -3' miRNA: 3'- -GUGGCG--CCGCGCuaCuUGAaCUUGag -5' |
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29401 | 5' | -53.1 | NC_006151.1 | + | 4220 | 0.67 | 0.95354 |
Target: 5'- gGCCGgGGCGCGGgcGGGCgcGGGCa- -3' miRNA: 3'- gUGGCgCCGCGCUa-CUUGaaCUUGag -5' |
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29401 | 5' | -53.1 | NC_006151.1 | + | 4793 | 0.68 | 0.913032 |
Target: 5'- gGCCGCGGCGCGGU-AGC--GGGC-Cg -3' miRNA: 3'- gUGGCGCCGCGCUAcUUGaaCUUGaG- -5' |
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29401 | 5' | -53.1 | NC_006151.1 | + | 5545 | 0.66 | 0.967956 |
Target: 5'- cCGCCucGCGGCgGCGGgcucgucGAGCagGGGCUCg -3' miRNA: 3'- -GUGG--CGCCG-CGCUa------CUUGaaCUUGAG- -5' |
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29401 | 5' | -53.1 | NC_006151.1 | + | 6141 | 0.7 | 0.831992 |
Target: 5'- gGCCGCGGcCGCGA-GGACggcGGcCUCg -3' miRNA: 3'- gUGGCGCC-GCGCUaCUUGaa-CUuGAG- -5' |
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29401 | 5' | -53.1 | NC_006151.1 | + | 6230 | 0.67 | 0.95354 |
Target: 5'- aGCCGCGGCGCcggGAGCccuGGCUg -3' miRNA: 3'- gUGGCGCCGCGcuaCUUGaacUUGAg -5' |
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29401 | 5' | -53.1 | NC_006151.1 | + | 6291 | 0.68 | 0.924663 |
Target: 5'- gGCCGCGGCGgCGGccgccagGAGCUggcUGAAgUUg -3' miRNA: 3'- gUGGCGCCGC-GCUa------CUUGA---ACUUgAG- -5' |
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29401 | 5' | -53.1 | NC_006151.1 | + | 7122 | 0.67 | 0.944908 |
Target: 5'- gGCCGCGGCGCGccaAUGAGaUUGucCg- -3' miRNA: 3'- gUGGCGCCGCGC---UACUUgAACuuGag -5' |
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29401 | 5' | -53.1 | NC_006151.1 | + | 9492 | 0.7 | 0.840455 |
Target: 5'- gGCCGCGGCGUGGgaGAGCg-GGGCg- -3' miRNA: 3'- gUGGCGCCGCGCUa-CUUGaaCUUGag -5' |
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29401 | 5' | -53.1 | NC_006151.1 | + | 19423 | 0.66 | 0.96121 |
Target: 5'- cCACCGCuccggGGUGaCGAUGGGCg---GCUCg -3' miRNA: 3'- -GUGGCG-----CCGC-GCUACUUGaacuUGAG- -5' |
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29401 | 5' | -53.1 | NC_006151.1 | + | 19640 | 0.67 | 0.949346 |
Target: 5'- uCGCCGCGcGCGUcgagGGUGAAgUUGGcgccCUCg -3' miRNA: 3'- -GUGGCGC-CGCG----CUACUUgAACUu---GAG- -5' |
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29401 | 5' | -53.1 | NC_006151.1 | + | 20763 | 0.67 | 0.944908 |
Target: 5'- cCACCGCGGCggacgcGCGccGGGCgagcGGCUCg -3' miRNA: 3'- -GUGGCGCCG------CGCuaCUUGaac-UUGAG- -5' |
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29401 | 5' | -53.1 | NC_006151.1 | + | 27443 | 0.67 | 0.940223 |
Target: 5'- gCGCgGCGGaCGCGGUGggUcggGGGCg- -3' miRNA: 3'- -GUGgCGCC-GCGCUACuuGaa-CUUGag -5' |
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29401 | 5' | -53.1 | NC_006151.1 | + | 29602 | 0.67 | 0.935288 |
Target: 5'- gGCCGCGGCGgCGG-GGGCU-GGugUg -3' miRNA: 3'- gUGGCGCCGC-GCUaCUUGAaCUugAg -5' |
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29401 | 5' | -53.1 | NC_006151.1 | + | 29970 | 0.7 | 0.840455 |
Target: 5'- gACCGCGGCGaUGGUGAA--UGGGCcCg -3' miRNA: 3'- gUGGCGCCGC-GCUACUUgaACUUGaG- -5' |
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29401 | 5' | -53.1 | NC_006151.1 | + | 31558 | 0.68 | 0.918973 |
Target: 5'- gCGCCGCGGUGCGc-GAACgUGA--UCa -3' miRNA: 3'- -GUGGCGCCGCGCuaCUUGaACUugAG- -5' |
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29401 | 5' | -53.1 | NC_006151.1 | + | 32779 | 0.69 | 0.886793 |
Target: 5'- aCGCCGCGGcCGCGggGGGCcgaagcGGACg- -3' miRNA: 3'- -GUGGCGCC-GCGCuaCUUGaa----CUUGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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