miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29401 5' -53.1 NC_006151.1 + 119092 0.66 0.967956
Target:  5'- gGCCGCGGCGCucgGcGCguacgUGAGC-Cg -3'
miRNA:   3'- gUGGCGCCGCGcuaCuUGa----ACUUGaG- -5'
29401 5' -53.1 NC_006151.1 + 117674 1.1 0.004058
Target:  5'- gCACCGCGGCGCGAUGAACUUGAACUCg -3'
miRNA:   3'- -GUGGCGCCGCGCUACUUGAACUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 116409 0.72 0.758134
Target:  5'- gGCCaCGGCGU--UGAGCUUGuAGCUCg -3'
miRNA:   3'- gUGGcGCCGCGcuACUUGAAC-UUGAG- -5'
29401 5' -53.1 NC_006151.1 + 112605 0.67 0.944908
Target:  5'- cCGCCGCGGCGcCGcUGGcGCU-GGACg- -3'
miRNA:   3'- -GUGGCGCCGC-GCuACU-UGAaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 112442 0.7 0.814501
Target:  5'- cCGCCGCcGCGCGccAUGGGCUgGAGCg- -3'
miRNA:   3'- -GUGGCGcCGCGC--UACUUGAaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 112057 0.7 0.840455
Target:  5'- gGCgGCGGCgGUGGUGGugggGCUggugGAGCUCc -3'
miRNA:   3'- gUGgCGCCG-CGCUACU----UGAa---CUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 109553 0.67 0.930102
Target:  5'- gCGCCGUGGaCGUGGcccGAGCcgagGGACUCu -3'
miRNA:   3'- -GUGGCGCC-GCGCUa--CUUGaa--CUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 106917 0.7 0.848718
Target:  5'- gCACCGCGGCGUGuccacGGACcucAGCUCc -3'
miRNA:   3'- -GUGGCGCCGCGCua---CUUGaacUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 106794 0.67 0.935288
Target:  5'- gGCCGCGGCGgCGGUGcuCgucgGGGCc- -3'
miRNA:   3'- gUGGCGCCGC-GCUACuuGaa--CUUGag -5'
29401 5' -53.1 NC_006151.1 + 106653 0.67 0.929569
Target:  5'- aCGCCGCGGCGCacGUGcGCgaGGccgcggcGCUCg -3'
miRNA:   3'- -GUGGCGCCGCGc-UACuUGaaCU-------UGAG- -5'
29401 5' -53.1 NC_006151.1 + 106337 0.66 0.970996
Target:  5'- gACCGCgcgcuGGaCGCGGUGGACacgcUGGACg- -3'
miRNA:   3'- gUGGCG-----CC-GCGCUACUUGa---ACUUGag -5'
29401 5' -53.1 NC_006151.1 + 105526 0.67 0.95354
Target:  5'- gCAUgGCGGCGCGcAUcGGGCccGAGCUg -3'
miRNA:   3'- -GUGgCGCCGCGC-UA-CUUGaaCUUGAg -5'
29401 5' -53.1 NC_006151.1 + 104721 0.67 0.95354
Target:  5'- gCugCGCGGCGCcGUGAccuaccuggagcGCUUcGACUUu -3'
miRNA:   3'- -GugGCGCCGCGcUACU------------UGAAcUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 103078 0.69 0.872237
Target:  5'- gCACCuggaGCGGCGCGAgcUGGACac--GCUCa -3'
miRNA:   3'- -GUGG----CGCCGCGCU--ACUUGaacuUGAG- -5'
29401 5' -53.1 NC_006151.1 + 102505 0.66 0.967956
Target:  5'- aCGCCGCGGCGCG--GGACcccGGCg- -3'
miRNA:   3'- -GUGGCGCCGCGCuaCUUGaacUUGag -5'
29401 5' -53.1 NC_006151.1 + 100898 0.66 0.966027
Target:  5'- gCGCCGCGGCGCGcgcgcgcccgacgacGcGAGCgcGGGCg- -3'
miRNA:   3'- -GUGGCGCCGCGC---------------UaCUUGaaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 100434 0.66 0.96121
Target:  5'- gCugCGCGGCGUGAUGGcgcagACgacgGAggcGCUg -3'
miRNA:   3'- -GugGCGCCGCGCUACU-----UGaa--CU---UGAg -5'
29401 5' -53.1 NC_006151.1 + 99084 0.66 0.957493
Target:  5'- gCACCGUGGCGCGGcgccUGcGCacGGAC-Ca -3'
miRNA:   3'- -GUGGCGCCGCGCU----ACuUGaaCUUGaG- -5'
29401 5' -53.1 NC_006151.1 + 97743 0.66 0.967956
Target:  5'- aGCgCGCGGUGCGG-GAACacgUG-GCUCc -3'
miRNA:   3'- gUG-GCGCCGCGCUaCUUGa--ACuUGAG- -5'
29401 5' -53.1 NC_006151.1 + 97361 0.69 0.893718
Target:  5'- gGCCGCGGCGgCGgcGGGCgcggcggGGGCgUCg -3'
miRNA:   3'- gUGGCGCCGC-GCuaCUUGaa-----CUUG-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.