miRNA display CGI


Results 1 - 20 of 599 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29403 3' -61.2 NC_006151.1 + 110197 0.66 0.700862
Target:  5'- aUAGCGCGccGCCuGCGgGAGa-CGCGg -3'
miRNA:   3'- cGUCGUGCuuCGG-CGCgCUCggGCGC- -5'
29403 3' -61.2 NC_006151.1 + 5659 0.66 0.700862
Target:  5'- gGCGGCGgggGAGGCUGgggaaGCGGGCCCcCGc -3'
miRNA:   3'- -CGUCGUg--CUUCGGCg----CGCUCGGGcGC- -5'
29403 3' -61.2 NC_006151.1 + 9640 0.66 0.700862
Target:  5'- aGCGGgAgGGAGagGCGCGGcGCcCCGCGc -3'
miRNA:   3'- -CGUCgUgCUUCggCGCGCU-CG-GGCGC- -5'
29403 3' -61.2 NC_006151.1 + 19475 0.66 0.700862
Target:  5'- gGCGGCAgGuAGUCGC-CGAuGCcCCGCu -3'
miRNA:   3'- -CGUCGUgCuUCGGCGcGCU-CG-GGCGc -5'
29403 3' -61.2 NC_006151.1 + 59407 0.66 0.700862
Target:  5'- cGCAGCAccuCGAgcagcAGCgGCGCcAGCUCgGCGu -3'
miRNA:   3'- -CGUCGU---GCU-----UCGgCGCGcUCGGG-CGC- -5'
29403 3' -61.2 NC_006151.1 + 68870 0.66 0.700862
Target:  5'- aGCAGCGCcGGGgCGCGCccGGCCaCGuCGa -3'
miRNA:   3'- -CGUCGUGcUUCgGCGCGc-UCGG-GC-GC- -5'
29403 3' -61.2 NC_006151.1 + 100620 0.66 0.700862
Target:  5'- gGCGcGCugGGAccuggucagcGCCGCGCu-GCgCCGCGc -3'
miRNA:   3'- -CGU-CGugCUU----------CGGCGCGcuCG-GGCGC- -5'
29403 3' -61.2 NC_006151.1 + 103902 0.66 0.700862
Target:  5'- gGC-GCugGAGGUgGCGCGcGCggCCGCc -3'
miRNA:   3'- -CGuCGugCUUCGgCGCGCuCG--GGCGc -5'
29403 3' -61.2 NC_006151.1 + 139306 0.66 0.700862
Target:  5'- uGCGGCGCGu-GCUGCuCGAccguGCUCGCc -3'
miRNA:   3'- -CGUCGUGCuuCGGCGcGCU----CGGGCGc -5'
29403 3' -61.2 NC_006151.1 + 141462 0.66 0.700862
Target:  5'- gGCGGUcUGGAGCCggggGCGcCGAGUCCGa- -3'
miRNA:   3'- -CGUCGuGCUUCGG----CGC-GCUCGGGCgc -5'
29403 3' -61.2 NC_006151.1 + 53640 0.66 0.700862
Target:  5'- uGCAGCucGCGcaccGUCG-GCGGGCUCGUGg -3'
miRNA:   3'- -CGUCG--UGCuu--CGGCgCGCUCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 72025 0.66 0.700862
Target:  5'- uCGGCGCc---CCGCGCGGGCgccccgCCGCGc -3'
miRNA:   3'- cGUCGUGcuucGGCGCGCUCG------GGCGC- -5'
29403 3' -61.2 NC_006151.1 + 122467 0.66 0.700862
Target:  5'- gGCGGCGggcgcCGAGGCCGgggaCGCGGGCgagacggCGCGc -3'
miRNA:   3'- -CGUCGU-----GCUUCGGC----GCGCUCGg------GCGC- -5'
29403 3' -61.2 NC_006151.1 + 108305 0.66 0.69989
Target:  5'- gGCGGCgacccccACGccccCCGCGCccGGGCCCGCc -3'
miRNA:   3'- -CGUCG-------UGCuuc-GGCGCG--CUCGGGCGc -5'
29403 3' -61.2 NC_006151.1 + 4083 0.66 0.695021
Target:  5'- aGCGGCgccacggugcgggcgACGAGGgCGacaGAGUCCGCGg -3'
miRNA:   3'- -CGUCG---------------UGCUUCgGCgcgCUCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 106191 0.66 0.691117
Target:  5'- cGCcGCugGAgccGGCgGUGCG-GCUCGCc -3'
miRNA:   3'- -CGuCGugCU---UCGgCGCGCuCGGGCGc -5'
29403 3' -61.2 NC_006151.1 + 87476 0.66 0.691117
Target:  5'- cCAGCAgCGGcAGCCGcCGCGGccGCCCcCGu -3'
miRNA:   3'- cGUCGU-GCU-UCGGC-GCGCU--CGGGcGC- -5'
29403 3' -61.2 NC_006151.1 + 73321 0.66 0.691117
Target:  5'- cCAGCAUGGGcggggcGCCGCGCGuGGCgaagagguuCUGCGg -3'
miRNA:   3'- cGUCGUGCUU------CGGCGCGC-UCG---------GGCGC- -5'
29403 3' -61.2 NC_006151.1 + 26942 0.66 0.691117
Target:  5'- cGCGGUcguaGAcGUCGCGCucguuGAGCUCGCGc -3'
miRNA:   3'- -CGUCGug--CUuCGGCGCG-----CUCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 12673 0.66 0.691117
Target:  5'- cGCGGC-CGcAGCCGcCGCGA-UCCGUc -3'
miRNA:   3'- -CGUCGuGCuUCGGC-GCGCUcGGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.