miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29403 5' -53.7 NC_006151.1 + 106773 0.66 0.971786
Target:  5'- cGCGCGUGAGCGCcuggaccuggccgcgGCGGcggugcucGUCggggccccGCUGGu -3'
miRNA:   3'- cCGUGCACUUGUG---------------CGCC--------UAGa-------CGACC- -5'
29403 5' -53.7 NC_006151.1 + 103068 0.66 0.97064
Target:  5'- aGGCGCacGGGCACcuggaGCGGcgCgaGCUGGa -3'
miRNA:   3'- -CCGUGcaCUUGUG-----CGCCuaGa-CGACC- -5'
29403 5' -53.7 NC_006151.1 + 105801 0.66 0.97064
Target:  5'- aGGCGCG-GAGCgACGCGGA-C-GC-GGu -3'
miRNA:   3'- -CCGUGCaCUUG-UGCGCCUaGaCGaCC- -5'
29403 5' -53.7 NC_006151.1 + 15039 0.66 0.97064
Target:  5'- uGCGCGUccacGGCGCGCGGGgccccggcgccuUCUGCgcGGc -3'
miRNA:   3'- cCGUGCAc---UUGUGCGCCU------------AGACGa-CC- -5'
29403 5' -53.7 NC_006151.1 + 74122 0.66 0.97064
Target:  5'- gGGCACGaGGuuGCGCGGGUgCaGCgGGu -3'
miRNA:   3'- -CCGUGCaCUugUGCGCCUA-GaCGaCC- -5'
29403 5' -53.7 NC_006151.1 + 79177 0.66 0.97064
Target:  5'- gGGCAUGUGAcgAUggGUGGA---GCUGGu -3'
miRNA:   3'- -CCGUGCACU--UGugCGCCUagaCGACC- -5'
29403 5' -53.7 NC_006151.1 + 115043 0.66 0.97064
Target:  5'- aGGCGCGUGuugcuguACGCGUccggGGggCgGCUGa -3'
miRNA:   3'- -CCGUGCACu------UGUGCG----CCuaGaCGACc -5'
29403 5' -53.7 NC_006151.1 + 131500 0.66 0.97064
Target:  5'- uGCACcagGAGCcccGCGCGGGggaacgGCUGGa -3'
miRNA:   3'- cCGUGca-CUUG---UGCGCCUaga---CGACC- -5'
29403 5' -53.7 NC_006151.1 + 103542 0.66 0.970348
Target:  5'- cGCugGUGGGCGC-CGGGcagccgcUCggggcGCUGGu -3'
miRNA:   3'- cCGugCACUUGUGcGCCU-------AGa----CGACC- -5'
29403 5' -53.7 NC_006151.1 + 51589 0.66 0.967629
Target:  5'- gGGCGgGUGGACG-GCGGGUCaGUa-- -3'
miRNA:   3'- -CCGUgCACUUGUgCGCCUAGaCGacc -5'
29403 5' -53.7 NC_006151.1 + 75864 0.66 0.967629
Target:  5'- gGGCgccccuGCGUGucCGCGUGGGUCaUGCg-- -3'
miRNA:   3'- -CCG------UGCACuuGUGCGCCUAG-ACGacc -5'
29403 5' -53.7 NC_006151.1 + 99502 0.66 0.967629
Target:  5'- gGGCGUG-GAGCACGUGGugcgccaCUGCaUGGc -3'
miRNA:   3'- -CCGUGCaCUUGUGCGCCua-----GACG-ACC- -5'
29403 5' -53.7 NC_006151.1 + 123137 0.66 0.967629
Target:  5'- aGUGCGUGcGCGagcaGCGGcgCgaGCUGGa -3'
miRNA:   3'- cCGUGCACuUGUg---CGCCuaGa-CGACC- -5'
29403 5' -53.7 NC_006151.1 + 5690 0.66 0.967629
Target:  5'- cGC-CGUGccGGCGCuGCGGccaccgCUGCUGGc -3'
miRNA:   3'- cCGuGCAC--UUGUG-CGCCua----GACGACC- -5'
29403 5' -53.7 NC_006151.1 + 26977 0.66 0.967629
Target:  5'- aGCGCGcu-GCGCaGCGGGgcgcUCUGCUcGGg -3'
miRNA:   3'- cCGUGCacuUGUG-CGCCU----AGACGA-CC- -5'
29403 5' -53.7 NC_006151.1 + 115791 0.66 0.967629
Target:  5'- gGGCGCGcucgucgggaUGcGCGCGCGGAUggccUUGCgcaUGGc -3'
miRNA:   3'- -CCGUGC----------ACuUGUGCGCCUA----GACG---ACC- -5'
29403 5' -53.7 NC_006151.1 + 130308 0.66 0.964407
Target:  5'- cGGCGCG-GAGCGCGCGcGccgCgcGCUcGGg -3'
miRNA:   3'- -CCGUGCaCUUGUGCGC-Cua-Ga-CGA-CC- -5'
29403 5' -53.7 NC_006151.1 + 113698 0.66 0.964407
Target:  5'- gGGCGCGUGu--GCGgGGAgCUG-UGGa -3'
miRNA:   3'- -CCGUGCACuugUGCgCCUaGACgACC- -5'
29403 5' -53.7 NC_006151.1 + 59213 0.66 0.964407
Target:  5'- cGCGCGUGGGCcC-CGGGaacgUCUGCcGGc -3'
miRNA:   3'- cCGUGCACUUGuGcGCCU----AGACGaCC- -5'
29403 5' -53.7 NC_006151.1 + 658 0.66 0.964407
Target:  5'- gGGCGCGgccgGGGCGggcucCGCGGAUC-GCa-- -3'
miRNA:   3'- -CCGUGCa---CUUGU-----GCGCCUAGaCGacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.